PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G19610.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 409aa    MW: 44654.6 Da    PI: 6.2298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G19610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000572133362354
                      HHCTSCCC...................................................................................... CS
              HLH  23 LrellPkas..................................................................................... 31 
                      L++l+P+++                                                                                     
  OPUNC04G19610.1 213 LQQLIPTSFldhpgtigtervcpdgsaleasfcmrtsrdvgsfsgyrsatleelmstdtkeqeitrlarscssrgsdpnkkrrseervvgnank 306
                      6667777666777777777777777777777777777777777777777777777777777777777777777777777778888888888888 PP

                      .........TTS-STCHHHHHHHHHHHHHH CS
              HLH  32 .......kapskKlsKaeiLekAveYIksL 54 
                             +++s K + a++L +++ YIk L
  OPUNC04G19610.1 307 sksetahSTSSSKTDTASVLLETITYIKFL 336
                      888888899*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.6E-5213219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.981282336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-4292341No hitNo description
SuperFamilySSF474597.85E-5316349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-5316345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MATSIWSTTT AYTHARSCTA PSCISSYFIT REAPGATAGR CSLSSTSPTS RGMWGSHPII  60
QMHAPFAAAG DTAFSSSPAV DARLQREHND VHLWKQSVLE EHVSNDNSFR ESLLSLLDNT  120
RDDVMAPEVF EGVPVACDYL KEMDMGGDGD SGEMAASAVA AYSLDSAGPH AGARSIEHGI  180
ASSPLAYQLG KNSAVDQRII QQQEVGAHMA AFLQQLIPTS FLDHPGTIGT ERVCPDGSAL  240
EASFCMRTSR DVGSFSGYRS ATLEELMSTD TKEQEITRLA RSCSSRGSDP NKKRRSEERV  300
VGNANKSKSE TAHSTSSSKT DTASVLLETI TYIKFLHEQI QLFSQPYMTN STNKGHIHWG  360
GEEKRKAGLE HDLRGRGLCL VPVSWTSQEY CDSILPECWA PAYRNYFYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1090940.0AK109094.1 Oryza sativa Japonica Group cDNA clone:002-155-A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636876.10.0uncharacterized protein LOC4336685 isoform X2
TrEMBLA0A0E0KU080.0A0A0E0KU08_ORYPU; Uncharacterized protein
STRINGOPUNC04G19610.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1425244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.12e-21bHLH family protein