PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

OPUNC04G19530.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 327aa MW: 37442.1 Da PI: 10.1398

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G19530.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.1	5.5e-26	205	254	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+++L++++++LKr+CRqy+I+RWPhRkiksl OPUNC04G19530.2 205 ASITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSL 254 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.759	190	275	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-21	206	254	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDAAAAAVST LSALAVFAST LDHDAGAVRS VHGYKVYGRG GRRRWERWVE REFVLTPASC 60 REVQAPVAPP RILPAEWRGR PAYREGQVVA EGSWRCILAF DSAAAAVAPP HTPPPVLCPF 120 LNPRLMCVPS LYNDLEKVFR FQNVEKIPKL MQCDSKEKLS RWDARDKNSD EVLASGSDSD 180 YDLQSGAELK PTVQKQRRAN KKHIASITLV DIAQYFHLPI REASRTLKIG VSILKRKCRQ 240 YNIPRWPHRK IKSLDSLIQD LEQEKHKQTE EEKQKAIMAL TRRKQMLETE KETIQQIPAM 300 DLKVETKQFR EDVFKRRYRA KKDLAND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	315	322	RRYRAKKD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606628	1e-119	AL606628.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence.
GenBank	AP014960	1e-119	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-119	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634162.1	0.0	protein RKD5 isoform X2
TrEMBL	A0A0E0KTZ7	0.0	A0A0E0KTZ7_ORYPU; Uncharacterized protein
STRING	OPUNC04G19530.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-42	RWP-RK domain-containing protein