PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G18320.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 335aa    MW: 35826.7 Da    PI: 4.8042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G18320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-20148199256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  OPUNC04G18320.1 148 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 199
                      8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-32147207IPR001471AP2/ERF domain
SMARTSM003805.5E-37148212IPR001471AP2/ERF domain
PfamPF008471.7E-14148198IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22148207IPR016177DNA-binding domain
CDDcd000183.18E-30148207No hitNo description
PROSITE profilePS5103224.144148206IPR001471AP2/ERF domain
PRINTSPR003672.1E-13149160IPR001471AP2/ERF domain
PRINTSPR003672.1E-13188208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDFHHGDADD FALEFIREHL LGVDGATTVT EPADLEVSDD ATFPVPPPPV AGLEAAYPPM  60
FLHGQRQQEQ HGCHVELTHE HVESAPAAEA AAYRAAPEQP VAEVMIKFGG EPSPVRPSSL  120
TISLPPSSFG SWASAAAAAT AAVDDFRKYR GVRQRPWGKF AAEIRDPKRR GSRVWLGTYD  180
TPVEAARAYD RAAFRMRGAK AILNFPNEVG TRGAELWAPP QPQTAAATTN KRKWQPSEDP  240
DDDDVEVIGV VSKAVKTEAP TSNSSSLSSS LTSRETTPAT SSTGTEAAGS AAESLPATPS  300
SWSWEQYWEA LLGGLPPLSP VSPHPALGFP QLTVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26147211468ATERF1
3gcc_A2e-26147211468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1091410.0AK109141.1 Oryza sativa Japonica Group cDNA clone:002-155-E09, full insert sequence.
GenBankAL6070060.0AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence.
GenBankAL7316130.0AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY3393790.0AY339379.1 Oryza sativa (japonica cultivar-group) Ap26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635116.11e-146ethylene-responsive transcription factor ERF105
TrEMBLA0A0E0KTH70.0A0A0E0KTH7_ORYPU; Uncharacterized protein
STRINGOPUNC04G18320.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.17e-32ethylene responsive element binding factor 5