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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G18300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 306aa MW: 32267.9 Da PI: 4.8501 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.3e-20 | 143 | 193 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f+tae+Aa a+++a+ +++g OPUNC04G18300.1 143 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFDTAEDAALAYDRAAYRMRG 193 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 142 | 201 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.72E-30 | 142 | 201 | No hit | No description |
PROSITE profile | PS51032 | 24.276 | 143 | 201 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-23 | 143 | 203 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.9E-39 | 143 | 207 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-14 | 143 | 193 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-11 | 144 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-11 | 167 | 183 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MARSMLRNHP EASVLDTIRQ HLLEEPRGGG GEAASFGSLV ADLWSDSLPF RDDDADDMVV 60 FGAMRDAFSC GWLPDGVFAE VKPEPLLSPD SSSYGGSSCC FGFVDMSEPV TPSEEASTGA 120 AEAAAVAEHG KEEAVEAVAR GKHYRGVRQR PWGKFAAEIR DPAKNGARVW LGTFDTAEDA 180 ALAYDRAAYR MRGSRALLNF PLRIGSEIAA AAAAAAAAGD KRPSPEPATS ESSFSSSSSS 240 CTTTTSSSSS SGSPKRRKRG EAAAASMSMP LVPPPSQLNW PVQAWYPAGA PVEQVAITPR 300 VEQLVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-40 | 139 | 206 | 1 | 68 | ATERF1 |
3gcc_A | 7e-40 | 139 | 206 | 1 | 68 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243188 | 0.0 | AK243188.1 Oryza sativa Japonica Group cDNA, clone: J100039E18, full insert sequence. | |||
GenBank | AL607006 | 0.0 | AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | EF061888 | 0.0 | EF061888.1 Oryza sativa (japonica cultivar-group) development related ERF protein (DRE) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636763.1 | 1e-157 | ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A0E0KTH5 | 0.0 | A0A0E0KTH5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G18300.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3800 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 3e-33 | ethylene responsive element binding factor 1 |