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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G18070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 204aa MW: 22362.5 Da PI: 10.7441 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 29.5 | 1.9e-09 | 19 | 80 | 1 | 65 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +Wt +e+laL +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + + OPUNC04G18070.1 19 CWTPDETLALARAYTARRLAVGRAHLTSADWAAVADAATP---TKTARQCRHKVEKLRRRLRSKR 80 8**********************************98766...57889***********998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.6E-8 | 18 | 81 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-4 | 19 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.249 | 20 | 73 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MASSPTNTAA NARRVPPPCW TPDETLALAR AYTARRLAVG RAHLTSADWA AVADAATPTK 60 TARQCRHKVE KLRRRLRSKR RRPCPLLDAI DLLDGPSPSA SPSQSPSPPP PASPPPPPAP 120 SSPPPPKKRR LPDADADADP EDDGESDVVK ALRAIGEGFL RAEQRRMEAA RKTQQMRMEM 180 ALRHLDSQRR LMEALVDRIV DSLE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 76 | KLRRRLR |
2 | 71 | 77 | LRRRLRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606695 | 0.0 | AL606695.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08, complete sequence. | |||
GenBank | AL606728 | 0.0 | AL606728.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0038F03, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653630.1 | 8e-84 | PREDICTED: leiomodin-2-like, partial | ||||
TrEMBL | A0A0E0KTE6 | 1e-138 | A0A0E0KTE6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G18070.1 | 1e-139 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13911 | 20 | 24 |