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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC04G18070.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 204aa MW: 22362.5 Da PI: 10.7441 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC04G18070.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 29.5 | 1.9e-09 | 19 | 80 | 1 | 65 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65
+Wt +e+laL +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + +
OPUNC04G18070.1 19 CWTPDETLALARAYTARRLAVGRAHLTSADWAAVADAATP---TKTARQCRHKVEKLRRRLRSKR 80
8**********************************98766...57889***********998766 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 204 aa
Download sequence Send
to blast |
MASSPTNTAA NARRVPPPCW TPDETLALAR AYTARRLAVG RAHLTSADWA AVADAATPTK 60 TARQCRHKVE KLRRRLRSKR RRPCPLLDAI DLLDGPSPSA SPSQSPSPPP PASPPPPPAP 120 SSPPPPKKRR LPDADADADP EDDGESDVVK ALRAIGEGFL RAEQRRMEAA RKTQQMRMEM 180 ALRHLDSQRR LMEALVDRIV DSLE
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 70 | 76 | KLRRRLR |
2 | 71 | 77 | LRRRLRS |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL606695 | 0.0 | AL606695.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08, complete sequence. |
GenBank | AL606728 | 0.0 | AL606728.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0038F03, complete sequence. |
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |