PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G18070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 204aa    MW: 22362.5 Da    PI: 10.7441
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G18070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.51.9e-091980165
         trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65
                     +Wt +e+laL +a++ +  +++r+ l  ++W++v+++      ++++ qC++k e+l++r +  +
  OPUNC04G18070.1 19 CWTPDETLALARAYTARRLAVGRAHLTSADWAAVADAATP---TKTARQCRHKVEKLRRRLRSKR 80
                     8**********************************98766...57889***********998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.6E-81881No hitNo description
Gene3DG3DSA:1.10.10.606.5E-41976IPR009057Homeodomain-like
PROSITE profilePS500906.2492073IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MASSPTNTAA NARRVPPPCW TPDETLALAR AYTARRLAVG RAHLTSADWA AVADAATPTK  60
TARQCRHKVE KLRRRLRSKR RRPCPLLDAI DLLDGPSPSA SPSQSPSPPP PASPPPPPAP  120
SSPPPPKKRR LPDADADADP EDDGESDVVK ALRAIGEGFL RAEQRRMEAA RKTQQMRMEM  180
ALRHLDSQRR LMEALVDRIV DSLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076KLRRRLR
27177LRRRLRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066950.0AL606695.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08, complete sequence.
GenBankAL6067280.0AL606728.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0038F03, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653630.18e-84PREDICTED: leiomodin-2-like, partial
TrEMBLA0A0E0KTE61e-138A0A0E0KTE6_ORYPU; Uncharacterized protein
STRINGOPUNC04G18070.11e-139(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139112024