PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G17930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 737aa MW: 79498.3 Da PI: 6.3282 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 100.3 | 1.6e-31 | 96 | 180 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi++r+em+ ++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f++lea OPUNC04G17930.1 96 RWPREETLALIRIRSEMDATFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTELEA 180 8*********************************************************************866665..******985 PP | |||||||
2 | trihelix | 107.3 | 1e-33 | 483 | 568 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r e++ r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a OPUNC04G17930.1 483 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMQRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 568 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 9.1E-4 | 93 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 4.94E-30 | 95 | 160 | No hit | No description |
Pfam | PF13837 | 4.3E-22 | 95 | 181 | No hit | No description |
PROSITE profile | PS50090 | 7.155 | 95 | 153 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.805 | 476 | 540 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.8E-6 | 480 | 542 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.4E-23 | 482 | 569 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-4 | 482 | 539 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 4.87E-29 | 483 | 547 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 737 aa Download sequence Send to blast |
MQQQQGGGSQ YGAVPPDMGL FSPTHHASAA PLPLSSRPPP AALSQPPPPQ QQPHRTSYDE 60 LAAATSAGAG GFPDDDMLGD AGGSGGGGGS GAAVNRWPRE ETLALIRIRS EMDATFRDAT 120 LKGPLWEEVS RKLAELGYKR SAKKCKEKFE NVHKYYKRTK EGRAGRQDGK SYRFFTELEA 180 LHAAAPQTPQ PQQQQLPPVT SSAPAMHAFA APPVSAPPPM SAMPPPPPGP IQPAPISSAA 240 PAVPLELPPQ PPINLQGLSF SSMSGSESDD ESEDDEMTAE TGGSQDRLGK RKRGAGGKKL 300 ATFFEGLIKQ VVDMQEEMQR RFLETMEKRE AERTAREEAW RRQEVARLNR EQEQLAQERA 360 AAASRDAAII SFLQRIGGQS VQVPPVATVI QMPTPVQLQT PPPVKQPARQ HQPHPTPPAP 420 IPASPLQQQP PQPQHKETSH HEAVTPRSAP PTSGSSLEMV PAAEQHVESG LGGGEGGSAS 480 SSRWPKTEVQ ALIQLRMELD MRYQETGPKG PLWEEISSGM QRLGYNRSSK RCKEKWENIN 540 KYFKKVKESN KKRPEDSKTC PYFHQLDAIY RRKHLTGGGG GGGGASAANV ASTVAATTIE 600 HQNSNRHEIE GKNINDNDKR NNGGGGGAQV PTSNGDTAPT TATFDVDSGM KKPEDIVREL 660 SEQLPREFTT DETDSDDMGD DYTDDGEEGE DDGKMQYRIQ FQRPNPGGAN TAPPPATTPA 720 SAVPTSTPTS TFLAMVQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 146 | KRSAKKCKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X68261 | 0.0 | X68261.1 O.sativa gt-2 gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637050.1 | 0.0 | trihelix transcription factor GTL1 isoform X2 | ||||
TrEMBL | A0A0E0KTC8 | 0.0 | A0A0E0KTC8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G17930.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 5e-48 | Trihelix family protein |