PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC04G17880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 252aa MW: 26739.9 Da PI: 5.1537 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.9 | 1.5e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + + ++ fC ++ lC C H+ H+ OPUNC04G17880.1 4 QCDVCAAEAASVFCCADEAALCGACDRRVHSAnklagkHR 43 7**************************9996566777776 PP | |||||||
2 | zf-B_box | 26.9 | 1e-08 | 60 | 101 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++ C+ ++ek+ lfC++++ lC++C ++ H H OPUNC04G17880.1 60 KPPLCDICQEKRGFLFCKEDRAILCRECDVAVHTTseltrrH 101 6899***************************99544555555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.0E-11 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.741 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.92E-6 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 1.8E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
Gene3D | G3DSA:3.30.40.10 | 1.7E-5 | 52 | 140 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SMART | SM00336 | 3.3E-14 | 59 | 106 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.409 | 59 | 106 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.1E-7 | 60 | 101 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.11E-9 | 62 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MKVQCDVCAA EAASVFCCAD EAALCGACDR RVHSANKLAG KHRRFSLLQP LSSSSSSAQK 60 PPLCDICQEK RGFLFCKEDR AILCRECDVA VHTTSELTRR HSRFLLTGVR LSSAPMDSPA 120 PSVEEEEAEE DYSCSPCSVA GTAAGSASDG SSISEYLIKT LPGWHVEDFL VDEATAAAAA 180 SSSSDGLFQG GLAQIGGVPD GYAAWAGREQ LHSGGAVAAD ERASRELWVP QIHAEWGAGS 240 KRPRASPPCL YW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK061333 | 0.0 | AK061333.1 Oryza sativa Japonica Group cDNA clone:006-303-A11, full insert sequence. | |||
GenBank | CT830169 | 0.0 | CT830169.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA102E21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634023.1 | 1e-160 | B-box zinc finger protein 20 isoform X2 | ||||
TrEMBL | A0A0E0KTC2 | 0.0 | A0A0E0KTC2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G17880.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39070.1 | 2e-44 | DBB family protein |