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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC04G17180.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
ERF |
Protein Properties |
Length: 460aa MW: 49406.9 Da PI: 8.9551 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC04G17180.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 60.2 | 4.7e-19 | 209 | 259 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge
OPUNC04G17180.1 209 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 259
59******9.**********955...5**************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 460 aa
Download sequence Send
to blast |
MDAPSGESGG GGGGRRWKGK GVTPIQPRRQ LGTVLEDSSA ALLRPLKKIG RSPDRLLRSA 60 SSLSTSSSAP PSPRSSSASD APVRVISSSP PSPSPPSARH IFPFAYEAST TTVGGSPRLH 120 PLWQQSSMSQ PASPQQQQRP LQHQQMISFG ASPPCSTTQF VVPENAQQQQ MLLRYWSEAL 180 NLSPRGGPGG VPPWLYQQLL RAPPPPQKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD 240 TAEDAAMAYD REAFKLRGEN ARLNFPDRFL GKGRAGGSGR TCVSSSAAAA ASCSSSSPSP 300 PETPDEANTQ QQAPQQREQR DTAGVSMEKK QPQPPAPNSR QEGCSGGDAA APYPAEMLHA 360 PASSGSMWVA PDESWFSTWG PGSSFWDDYD MDSARSLFLH PRFTGDETSM DHSGTQATVP 420 AAAATAAGIS MPCDDVPVTS SSDLPPQGTP HTPTFMWKED
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL662976 | 0.0 | AL662976.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence. |
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
GenBank | CR855230 | 0.0 | CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence. |