PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OPUNC04G15260.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CO-like

Protein Properties

Length: 336aa MW: 34882.7 Da PI: 5.0162

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G15260.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24	8.2e-08	22	58	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 r C+ ++ + ++lfC+ + +lC+ C H g H OPUNC04G15260.1 22 RACDACGGEAARLFCRADAAFLCAGCDARAH-GpgsrH 58 68*************************9999.545556 PP
2	zf-B_box	22.9	1.8e-07	61	105	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p OPUNC04G15260.1 61 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 105 679*****************************6688888898877 PP
3	CCT	66.9	5.5e-23	246	289	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+llRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ OPUNC04G15260.1 246 REARLLRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 289 9*****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.424	19	63	IPR000315	B-box-type zinc finger
SMART	SM00336	2.5E-9	19	63	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.8E-6	22	59	IPR000315	B-box-type zinc finger
CDD	cd00021	1.30E-9	22	63	No hit	No description
PROSITE profile	PS50119	10.424	59	106	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.1E-6	61	106	IPR000315	B-box-type zinc finger
SMART	SM00336	4.6E-9	64	106	IPR000315	B-box-type zinc finger
Pfam	PF06203	2.2E-17	246	288	IPR010402	CCT domain
PROSITE profile	PS51017	16.767	246	288	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MAMEGDDKSA VVGGAYWGLA ARACDACGGE AARLFCRADA AFLCAGCDAR AHGPGSRHAR 60 VWLCEVCEHA PAAVTCRADA AALCAACDAD IHSANPLARR HERLPVAPFF GALADAPKPF 120 ASSGPPGAGA NGEAAADDDG SNDAEAASWL LPEPDHGQKD GAVGATDVFY GADSDPYLDL 180 DFARSMDDIK AIGVQNGPPE LDITGGKLFY SDHSMNHSVS SSEAAVVPDA AAGGAPMPVV 240 SKGREREARL LRYREKRKSR RFEKTIRYAS RKAYAETRPR IKGRFAKRTK GGAGADADAD 300 GEDEEMYSSA AAAVAALMAP GGSDADYGVD GVVPTF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121024	0.0	AK121024.1 Oryza sativa Japonica Group cDNA clone:J023049O11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633841.1	1e-176	zinc finger protein CONSTANS-LIKE 3
TrEMBL	A0A0E0KSC5	0.0	A0A0E0KSC5_ORYPU; Uncharacterized protein
STRING	OPUNC04G15260.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2191	32	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24790.2	4e-27	CONSTANS-like 3