PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 903aa MW: 98035.8 Da PI: 5.7355

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G15130.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.2	1e-25	541	582	11	52
RWP-RK 11 skyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ OPUNC04G15130.1 541 EQYFSGSLKDAAKSLGVCPTTLKRICRQHGISRWPSRKINKV 582 79**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.516	517	602	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-24	541	582	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.15E-24	792	885	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.7E-23	798	880	No hit	No description
PROSITE profile	PS51745	25.647	801	883	IPR000270	PB1 domain
SMART	SM00666	2.7E-21	801	883	IPR000270	PB1 domain
Pfam	PF00564	2.7E-17	802	882	IPR000270	PB1 domain
CDD	cd06407	7.28E-30	802	882	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 903 aa Download sequence Send to blast
MDMPTPSNRA GCNGNTSGTM GPSDVPYGTA AMNFDCYSEI CSPSVADQLF SLLNDPAAHR 60 MFAMWSSTGS SPRAAGTSED VPLDAYPGLG EAVEEPSQMM SVNPTEAEKT DKSSGELGSD 120 DGAHQGSSMV PRSVAGNSLA DRMLMALSLF RESLGGGALA QVWMPIEQEG HVVLSTCEQP 180 FLLDQVLAGY REVSRHFVFS AKEEPGLQPG LPGRVFISGV PEWTSSVLYY NRPEYLRMEH 240 ALHHEIRGSL AMPIYDPSKD SCCAVLELVT RKVKPDFSAE MDSAVNLKAT KGSSNQKFFS 300 ENQQFAFTEI LDVLRAICHA HMLPLALTWV PTSNGIDGGY VVGRDGASYS QSEKTILRIH 360 ESACYVNDAK MQGFLEACAR RHLEKGQGIA GRALKSNLPF FSPDIKEYSI EDYPLAHHAR 420 KFSLHAAVAI RLRSTYTGND DYILEFFLPI NCKGSGEQQM LLNNLSSTMQ RICKSLRTVY 480 EAEVDKVNAG TAAVFRKNNE SCLPTGNTES SSHGDQSITG VSFEDASLDN KPGVMEPELA 540 EQYFSGSLKD AAKSLGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLKKIQ TVINSVHGVD 600 RSLQYDPATG SLVPVVSLPE KLVFPPCDGL PTPPVGKTVE ENSDPKSEQG CSLPDGSQRQ 660 SCQLQISDVK KSNDDEFHIG NGHSDSYCAD ATAKSNSEGS QGPLCPTGAF SALHLKGTDC 720 TNPSSSLHPS SESIRDQIVG RNSPSIQQAD LDMLDNHEAK DKDHMHPSNS GMTDSSSGSA 780 SSHPTFKQNT RSALKDTASP ALTVKATYNG DTVRFKFLPS MGWYHLLEEI AKRFKLPTGA 840 FQLKYKDDED EWVILANDSD LQECVDVLDS IGSRNVKLQV RDLSCIVSSS GSSTCLQLAA 900 HSS

Sequence ? help Back to Top

Protein Sequence Length: 903 aa Download sequence Send to blast

MDMPTPSNRA GCNGNTSGTM GPSDVPYGTA AMNFDCYSEI CSPSVADQLF SLLNDPAAHR  60
MFAMWSSTGS SPRAAGTSED VPLDAYPGLG EAVEEPSQMM SVNPTEAEKT DKSSGELGSD  120
DGAHQGSSMV PRSVAGNSLA DRMLMALSLF RESLGGGALA QVWMPIEQEG HVVLSTCEQP  180
FLLDQVLAGY REVSRHFVFS AKEEPGLQPG LPGRVFISGV PEWTSSVLYY NRPEYLRMEH  240
ALHHEIRGSL AMPIYDPSKD SCCAVLELVT RKVKPDFSAE MDSAVNLKAT KGSSNQKFFS  300
ENQQFAFTEI LDVLRAICHA HMLPLALTWV PTSNGIDGGY VVGRDGASYS QSEKTILRIH  360
ESACYVNDAK MQGFLEACAR RHLEKGQGIA GRALKSNLPF FSPDIKEYSI EDYPLAHHAR  420
KFSLHAAVAI RLRSTYTGND DYILEFFLPI NCKGSGEQQM LLNNLSSTMQ RICKSLRTVY  480
EAEVDKVNAG TAAVFRKNNE SCLPTGNTES SSHGDQSITG VSFEDASLDN KPGVMEPELA  540
EQYFSGSLKD AAKSLGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLKKIQ TVINSVHGVD  600
RSLQYDPATG SLVPVVSLPE KLVFPPCDGL PTPPVGKTVE ENSDPKSEQG CSLPDGSQRQ  660
SCQLQISDVK KSNDDEFHIG NGHSDSYCAD ATAKSNSEGS QGPLCPTGAF SALHLKGTDC  720
TNPSSSLHPS SESIRDQIVG RNSPSIQQAD LDMLDNHEAK DKDHMHPSNS GMTDSSSGSA  780
SSHPTFKQNT RSALKDTASP ALTVKATYNG DTVRFKFLPS MGWYHLLEEI AKRFKLPTGA  840
FQLKYKDDED EWVILANDSD LQECVDVLDS IGSRNVKLQV RDLSCIVSSS GSSTCLQLAA  900
HSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060753	0.0	AK060753.1 Oryza sativa Japonica Group cDNA clone:001-032-G10, full insert sequence.
GenBank	AK103154	0.0	AK103154.1 Oryza sativa Japonica Group cDNA clone:J033120P08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636521.1	0.0	protein NLP2
Refseq	XP_015636522.1	0.0	protein NLP2
Refseq	XP_015636523.1	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A0E0KSB0	0.0	A0A0E0KSB0_ORYPU; Uncharacterized protein
STRING	OPUNC04G15130.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-168	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]