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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G13620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 714aa MW: 74364.5 Da PI: 7.4706 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 78.5 | 7.4e-25 | 313 | 356 | 2 | 46 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk 46 +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkvers+ +++ OPUNC04G13620.1 313 EDGYSWRKYGQKQVKHSEYPRSYYKCTHANCVVKKKVERSH-EGH 356 8***************************************9.554 PP | |||||||
2 | WRKY | 35.2 | 2.4e-11 | 448 | 469 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vkg+++pr OPUNC04G13620.1 448 LDDGYRWRKYGQKVVKGNPNPR 469 59*******************9 PP | |||||||
3 | WRKY | 54.4 | 2.4e-17 | 502 | 539 | 22 | 59 |
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe OPUNC04G13620.1 502 RSYYKCTHPGCLVRKHVERASHDLKSVITTYEGKHNHE 539 9************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.3E-22 | 303 | 354 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.254 | 307 | 352 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-20 | 309 | 355 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-20 | 312 | 360 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-19 | 313 | 355 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-34 | 433 | 468 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-9 | 440 | 470 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.377 | 443 | 541 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-34 | 448 | 540 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-7 | 449 | 470 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-13 | 501 | 541 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-11 | 502 | 539 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-34 | 502 | 541 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 714 aa Download sequence Send to blast |
MEGDIVMEEW KDSNHRGAEY LMTMPLQNFL ADAFPPPELL AGEGGGSRVA DAGGFEKHGL 60 SVAVGSPPPP PPPPEDGHSP LPLTPQFGQK FGSGGGGSLA DRRARGGFSN IARISVPSSA 120 AASDVSSAGA PSPYVTIPPG LSPTTLLESP VFLSNAMGQA SPTTGKLHML GGANDNNPIR 180 FESPPIEERS GAFSFKPLNL ASSHYAAAEK TKSLPNNQHQ SLPISVKTEA SIQTAQDEEA 240 NQTRQSQLMQ PQFSGGKLSR AAPDTVPAAA AAGGGGGDGV ASPPDHGQPA EGDAKGDSSA 300 AVAAAAAAAA VAEDGYSWRK YGQKQVKHSE YPRSYYKCTH ANCVVKKKVE RSHEGHVHDG 360 AVAQLESPEG VDVTSAVSDE VGRDDKATHV LPLVAAAASA AAADGHSDEL ERKRRKLESC 420 ATMDMSTASR AVREPRVVIQ TTSEVDILDD GYRWRKYGQK VVKGNPNPRF VSSRPLEPLL 480 HFQSSSSMDA DLLFVVVVIV IRSYYKCTHP GCLVRKHVER ASHDLKSVIT TYEGKHNHEV 540 PAARNSGHPA GSAAAGGGGA GSSSQPHGIV GGGIGRRPEV PSLQESLMRL GGGCGAAPFA 600 PHFGLHLPPR DPLAPMSNFP YSLAHAASPA LRGLPPPPPP PPVAGLGAVV EGLKYPMLAP 660 PSVHPLLRHR QGGGMETMVV PKAEVKQEAV PAGAGRGAAV YQQAMSRVSL GNQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-30 | 439 | 542 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-30 | 439 | 542 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606441 | 0.0 | AL606441.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634497.1 | 1e-167 | probable WRKY transcription factor 2 isoform X2 | ||||
Refseq | XP_015634498.1 | 1e-168 | WRKY transcription factor SUSIBA2 isoform X1 | ||||
Refseq | XP_015691496.1 | 1e-169 | PREDICTED: probable WRKY transcription factor 2, partial | ||||
TrEMBL | A0A0E0KRS2 | 0.0 | A0A0E0KRS2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G13620.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2075 | 38 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26440.1 | 4e-61 | WRKY DNA-binding protein 34 |