PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G11860.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 388aa    MW: 41539.6 Da    PI: 9.764
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G11860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.51.7e-1365146286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W++  + aLiea  e+  +l+rg+l+ p+W+ev++++ +++g+ +   s +qCk++++ l+k+yk +++   +       ++++f +l+
  OPUNC04G11860.1  65 WSEGATAALIEAWGERFVALGRGSLRHPQWQEVADAVsSREGYAKapkSDVQCKNRIDTLKKKYKIERAKPAS-------SWKFFGRLD 146
                      *************************************87888866222667**************99988876.......488888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2263148No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDDDDAASPS PSPSPVASAL PVADPVTVAA GPPSGLLALA LPIQKQQHAA ASPNPGGGGG  60
REDAWSEGAT AALIEAWGER FVALGRGSLR HPQWQEVADA VSSREGYAKA PKSDVQCKNR  120
IDTLKKKYKI ERAKPASSWK FFGRLDDLLA PTYNQKPGGN GGGGGGGGGA SLNGRNPVPT  180
ALRVGFPQRS RTPLMPAPLA AVKRRAPSLE PSASSESSDG FPPERELAFP PLPPNGKKSR  240
GADEGRGGGG GGDRAQGLRE LAQAIRRFGE AYERVETAKL EQAAEMERRR LDFASELESQ  300
RVQFFLNTQM ELSQQRLPAT ANRATRRRTT TTTTTKKKRA SDGTPNLCHH FSLEEEENRI  360
ALHCCSLAYI GWMQEEKCWL GSSVKLIV
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315930.0AL731593.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633896.11e-145trihelix transcription factor ASIL2
SwissprotQ9LJG82e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0E0KR440.0A0A0E0KR44_ORYPU; Uncharacterized protein
STRINGOPUNC04G11860.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-32sequence-specific DNA binding transcription factors