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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC04G11860.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 388aa MW: 41539.6 Da PI: 9.764 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC04G11860.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 42.5 | 1.7e-13 | 65 | 146 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W++ + aLiea e+ +l+rg+l+ p+W+ev++++ +++g+ + s +qCk++++ l+k+yk +++ + ++++f +l+
OPUNC04G11860.1 65 WSEGATAALIEAWGERFVALGRGSLRHPQWQEVADAVsSREGYAKapkSDVQCKNRIDTLKKKYKIERAKPAS-------SWKFFGRLD 146
*************************************87888866222667**************99988876.......488888876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MDDDDAASPS PSPSPVASAL PVADPVTVAA GPPSGLLALA LPIQKQQHAA ASPNPGGGGG 60 REDAWSEGAT AALIEAWGER FVALGRGSLR HPQWQEVADA VSSREGYAKA PKSDVQCKNR 120 IDTLKKKYKI ERAKPASSWK FFGRLDDLLA PTYNQKPGGN GGGGGGGGGA SLNGRNPVPT 180 ALRVGFPQRS RTPLMPAPLA AVKRRAPSLE PSASSESSDG FPPERELAFP PLPPNGKKSR 240 GADEGRGGGG GGDRAQGLRE LAQAIRRFGE AYERVETAKL EQAAEMERRR LDFASELESQ 300 RVQFFLNTQM ELSQQRLPAT ANRATRRRTT TTTTTKKKRA SDGTPNLCHH FSLEEEENRI 360 ALHCCSLAYI GWMQEEKCWL GSSVKLIV
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Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL731593 | 0.0 | AL731593.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08, complete sequence. |
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G14180.1 | 1e-32 | sequence-specific DNA binding transcription factors |