PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G11700.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 478aa    MW: 52024.2 Da    PI: 7.4588
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G11700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.35.2e-39101371129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      +ppGfrFhPtdeel+ +yLkkkv  +k++l evi+evd++k+ePw+L+  + + +  e     + + k++t+  kn+ t++g+ k+tg+dk + 
  OPUNC04G11700.1  10 VPPGFRFHPTDEELLLYYLKKKVGFEKFDL-EVIREVDLNKIEPWELQeVQDRVGAAERVVLLQPQGKQPTDASKNQPTNDGRGKETGRDKCIR 102
                      69****************************.99**************83333446678899999999*************************** PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  OPUNC04G11700.1 103 T-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137
                      9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-445158IPR003441NAC domain
PROSITE profilePS5100543.90310158IPR003441NAC domain
PfamPF023653.4E-1811136IPR003441NAC domain
PfamPF085832.8E-14396465IPR013892Cytochrome c oxidase biogenesis protein Cmc1-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0010181Molecular FunctionFMN binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWELQEVQD  60
RVGAAERVVL LQPQGKQPTD ASKNQPTNDG RGKETGRDKC IRTSYRKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDAD ESQSTSEDGW VVCRVFKKKC FFKIGGGGGE GSGGSQGGDV  180
GGGGHLAVSP PLGGGHAMAA ASHYMHPHQY HHHHHAAAAS SFYYTQMQPA PEPPHAAYSH  240
HVQVQDLLTN HRPSSAADAG YDFSGLPVDH QHPGLDVGSS DGGGVAAGAD GDQAAAAAAA  300
GSTEQQWQAM DGFSNGGAGA AAVQQQLGAM SSGQRGGEMD LWGYGRSSPP PPPRFAPASV  360
TAKLAAALHR LHDEAPGGRS LAVESPRRGS HSSLEMHPPL TLHRHPMCAE IIEAFQKCHV  420
DHPVKKFFGE CTDLKIKLDQ CFRQEKALKR KANFEESKKF KEQLQAYKKE MAEKDKEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-361015917166NO APICAL MERISTEM PROTEIN
1ut4_B8e-361015917166NO APICAL MERISTEM PROTEIN
1ut7_A8e-361015917166NO APICAL MERISTEM PROTEIN
1ut7_B8e-361015917166NO APICAL MERISTEM PROTEIN
4dul_A8e-361015917166NAC domain-containing protein 19
4dul_B8e-361015917166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1575001e-177AC157500.1 Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from chromosome 4, complete sequence.
GenBankAP0149601e-177AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661033.11e-166protein BEARSKIN1
TrEMBLA0A0E0KR200.0A0A0E0KR20_ORYPU; Uncharacterized protein
STRINGOPUNC04G11700.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.12e-56NAC domain containing protein 70