PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G11630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 112aa MW: 12591.3 Da PI: 4.5806 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.5e-16 | 17 | 60 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 ++y+GVr++k +g+Wv+eIr p g ++r++lg+f +ae+Aa a+++ OPUNC04G11630.1 17 CQYRGVRRRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDQ 60 78*****998.**********8...325*****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.59E-22 | 17 | 59 | No hit | No description |
Pfam | PF00847 | 3.5E-10 | 17 | 60 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-22 | 18 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-16 | 18 | 60 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-23 | 18 | 60 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.385 | 18 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MEEMVAMGRS SSAMAGCQYR GVRRRKWGKW VSEIRQPGTK TRIWLGSFES AEMAAVAHDQ 60 LGGSDEEFDV DSPRLWAEMA EAMLLDPPLW AMDVSEMEGP HCWAHGSLWD AC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731606 | 2e-72 | AL731606.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03, complete sequence. | |||
GenBank | CP012612 | 2e-72 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653443.1 | 7e-58 | PREDICTED: dehydration-responsive element-binding protein 1B | ||||
TrEMBL | A0A0E0KR10 | 8e-76 | A0A0E0KR10_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G11630.1 | 1e-76 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 4e-21 | ERF family protein |