PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G10810.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 724aa    MW: 76994.2 Da    PI: 5.2474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G10810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.18.5e-15133181355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++h   Er RR+++N++f+ L  l+P++     +K +Ka+i+e +++YIk+Lq
  OPUNC04G10810.1 133 KMHALTERERRKEMNNKFDILHALIPNL----PEKTDKATIVEATINYIKNLQ 181
                      57999**********************6....39******************9 PP
2HLH33.48.4e-11493536855
                      HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       Er RR+++++ f++L  llPk +     +K +Ka+i+ +A+ YIk L+
  OPUNC04G10810.1 493 TERERRKKMKNMFSTLHGLLPKiP-----GKADKATIVGEAIGYIKALE 536
                      7*********************88.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.358130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-16132196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.84E-15133185No hitNo description
PfamPF000103.9E-12133181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-16134196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-12136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.573485535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-14489547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13490546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-10490540No hitNo description
SMARTSM003532.6E-7493541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-8493536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MSQEGATNLS QGTQDTHDLT FTIATNTPLG STKMGYSDSS KSDENNISSK PTSPVVSSDV  60
IEIKETWENV VIADEEGEGG GDGFASDASE SKSKSSSDEV DCELLDLLAG ASEGCSGGNN  120
DDEVKSSADA DHKMHALTER ERRKEMNNKF DILHALIPNL PEKTDKATIV EATINYIKNL  180
QDEIHKLEML KAERERAINI ADTATAVTVD TALQAPPSSE EEHESVAVAA TREMTLADMV  240
HVWEQEVAAS GGSLGRGSPT AAPTPAAPPA ASSLQTWTGP NMTASLTGND AFITLSLPHQ  300
GGQNLVAGAV AVLERHHINV VTATVSTSEQ CNSLISLHCH LSPESSSSQN LTPLDKYKLA  360
MSELMLWSQH LHLPVHPMSQ EGTDLSQDVD EIPDHTAVAT TNNLVRSIKA EKSNSSSSSG  420
KPVETNIGLK VASPTVFEFN TKIEGIGKNT GVKREEGGEG GGRVGVSSGV RTRGTNGKGK  480
SAMDMEHALH IWTERERRKK MKNMFSTLHG LLPKIPGKAD KATIVGEAIG YIKALEDVVQ  540
KLETIKMERV RAQQWAATAA AAAAAVAANN GGGEGSSHSQ APLHSTAAVA VAEPVLPAPP  600
AVNAQPQKKA VAPPTLQTWS APNITLTMAG VDAFINMCLP RQKASFTTVA FVLEKHQIDV  660
VTSTISADQD KSLFSVHVRL NEASLQSPEG LTPEAKYKLA VSELMVLRSL SHLFWWPTTT  720
GSIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087280.0AK108728.1 Oryza sativa Japonica Group cDNA clone:002-150-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636599.11e-161transcription factor bHLH95
TrEMBLA0A0E0KQQ50.0A0A0E0KQQ5_ORYPU; Uncharacterized protein
STRINGOPUNC04G10810.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-32bHLH family protein