PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G09060.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 271aa    MW: 28627.9 Da    PI: 10.2819
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G09060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.3e-2166115255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  OPUNC04G09060.1  66 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 115
                      7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-3365124IPR001471AP2/ERF domain
PfamPF008471.1E-1366115IPR001471AP2/ERF domain
CDDcd000184.00E-3266124No hitNo description
SMARTSM003804.8E-3866129IPR001471AP2/ERF domain
PROSITE profilePS5103224.71166123IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2266124IPR016177DNA-binding domain
PRINTSPR003671.1E-116778IPR001471AP2/ERF domain
PRINTSPR003671.1E-1189105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MVSALAHVIR AAPDLQLPPH HHHPSATAQP QASSFYPTAV AASPSEQHHQ LGHSAAAEEQ  60
GGRRRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE DAAIAYDEAA LRFKGTKAKL  120
NFPERVQGRT DLGFLVTRGI PDHHRRHGGY PSPSPPAGVM PPPQQQQTVV PYPDLMQYAQ  180
LLQGAGAGAG GVSYLPFGAV LSPPPSSTVS SSSAPQILDF STQQLIRGGP PSPMPSGSGA  240
TAASSSTTSA SASSPGAWPY GSERKKKDSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2765127467ATERF1
3gcc_A2e-2765127467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1015010.0AK101501.1 Oryza sativa Japonica Group cDNA clone:J033044C14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636603.11e-103ethylene-responsive transcription factor ERF113
TrEMBLA0A0E0KQ030.0A0A0E0KQ03_ORYPU; Uncharacterized protein
STRINGOPUNC04G09060.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-23related to AP2 6l