PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G06990.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 391aa    MW: 43336.8 Da    PI: 5.5513
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G06990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like45.71.4e-14174223455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      l Wtp L ++F+ a++ L G++ A Pk+i+++m+v+ +   +++ HLQk+Rl
  OPUNC04G06990.1 174 LMWTPHLQKKFLYALQIL-GKD-ASPKNIKKIMGVDNIDCRQIAAHLQKHRL 223
                      78****************.665.****************************8 PP
2Response_reg56.71.3e-19151222107
                      EEESSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   2 livdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      l++dD+++ ++    +l+ + ++ +v++++++ +al+ l+++   +Dl+l D+ m +m+G+++lk  re + ++++i+++++ +  ++++++k+
  OPUNC04G06990.1  15 LVIDDDQFHADSTSCMLSaELNF-SVTVFTSPIKALDFLQNHAegVDLVLADVHMEEMNGFDFLKAARELHRSIQVIMMSTETTIYTMKRCVKL 107
                      89****************999**.******************999************************************************* PP

                      TESEEEESS--HHHH CS
     Response_reg  93 GakdflsKpfdpeel 107
                      Ga+  + Kp d   +
  OPUNC04G06990.1 108 GAQFLVNKPLDAGTI 122
                      *********998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.28E-2511129IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.8E-2512129No hitNo description
SMARTSM004489.0E-1412126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.90913130IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.30E-1715119No hitNo description
PfamPF000726.4E-1815123IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466898.96E-12168227IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-14169226IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-14174224IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MAQKEGLPPG RLSALVIDDD QFHADSTSCM LSAELNFSVT VFTSPIKALD FLQNHAEGVD  60
LVLADVHMEE MNGFDFLKAA RELHRSIQVI MMSTETTIYT MKRCVKLGAQ FLVNKPLDAG  120
TIQNLWQYVD LKVLRMEKIK DLLQGGVGDE STCASETNSL AENPKSDTKK KYYLMWTPHL  180
QKKFLYALQI LGKDASPKNI KKIMGVDNID CRQIAAHLQK HRLRLTKDLK KPSFTKDTSE  240
DASNSRIGPA KSHHVCHSAS VLQPRSNIQP AETTMQILTE DVEHDDVYAA MRRALQYGIV  300
FDESKHSSEP SGDEDEHVVV GGDQDGCANE TNDIDSSGDH HQVAADVATS CNANASQEII  360
NKMTNFDGMQ ATRGSKAAVF RLVDYSESDS D
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629631e-144AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149601e-144AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-144CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880730.10.0two-component response regulator ORR29
SwissprotQ7XS690.0ORR29_ORYSJ; Two-component response regulator ORR29
TrEMBLA0A0E0KPA30.0A0A0E0KPA3_ORYPU; Uncharacterized protein
STRINGOPUNC04G06990.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-22response regulator 14