PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G38860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 197aa MW: 21276.9 Da PI: 9.0856 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.5e-18 | 63 | 112 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +g+++AeIrd + ng r++lg+f++ae Aa a+++a+ +++g OPUNC03G38860.1 63 FRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAEAAALAYDQAAFAMRG 112 79******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.0E-30 | 62 | 121 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-35 | 62 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.708 | 62 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-22 | 63 | 122 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.62E-18 | 63 | 120 | No hit | No description |
Pfam | PF00847 | 9.2E-13 | 63 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-10 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-10 | 86 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MSPPPHPHVD GSARLTAGLI NFLESRRAGA GTMTTTNRLP APAPIDVQDD SSPPVQQQQQ 60 QAFRGVRKRP WGKFAAEIRD STRNGVRVWL GTFDSAEAAA LAYDQAAFAM RGSAAVLNFP 120 MEQVRRSMDV SSLLQEGASP VVALKRRHSM RAAAGRRKSG GRAEAEVMEL EDLGAEYLEE 180 LLAASQSESP STSHHSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-27 | 63 | 122 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00374 | DAP | Transfer from AT3G23240 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC092263 | 1e-130 | AC092263.7 Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence. | |||
GenBank | AK109390 | 1e-130 | AK109390.2 Oryza sativa Japonica Group cDNA clone:006-211-G07, full insert sequence. | |||
GenBank | AP014959 | 1e-130 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629379.1 | 3e-81 | ethylene-responsive transcription factor 15 | ||||
Swissprot | A0A3Q7I5Y9 | 2e-53 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A0E0KLW4 | 1e-140 | A0A0E0KLW4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G38860.1 | 1e-141 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 5e-33 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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