PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G37460.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 271aa MW: 30134.2 Da PI: 7.0818

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G37460.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	171	185	6	20
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L H OPUNC03G37460.1 171 CGTSFSRKDKLFAHV 185 **************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MYLKQDQDFS QMIMELCDFN GSSTTQARHG DEAAAAGDAR AVLTYLTFLE QKIGHLRGII 60 SSTPKPPPQI VAAELSCIVV QLVSISKNLA AAPDAARRCF YSCPYVGCKR NREHKNFQPL 120 KTPICVKNHY RRSHCDKSFT CRRCNVKKFS VLADLRTHEK HCGRDRWVCS CGTSFSRKDK 180 LFAHVAIFDG HSPALPPEDY DDDATTPAGS GHLPHAGGEV LSRMVDTNHF FSDELMIKGS 240 MDDERGNLSP MGLDYCEFDG IDLFAAAAFD F

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630047.1	1e-110	zinc finger protein STOP1 homolog
Swissprot	Q943I6	3e-61	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A0E0KLB3	0.0	A0A0E0KLB3_ORYPU; Uncharacterized protein
STRING	OPUNC03G37460.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	2e-61	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]