 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC03G36150.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 326aa MW: 34677.2 Da PI: 9.2555 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC03G36150.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.3 | 0.0011 | 105 | 127 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cg F L H+r+H
OPUNC03G36150.1 105 HECHICGLGFEMGQALGGHMRRH 127
79********************9 PP
|
| 2 | zf-C2H2 | 13 | 0.0003 | 282 | 304 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cg+ F L H+r+H
OPUNC03G36150.1 282 HECHICGQGFEMGQALGGHMRRH 304
79********************9 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57667 | 5.58E-5 | 47 | 76 | No hit | No description |
| PROSITE profile | PS50157 | 9.681 | 51 | 78 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 5.1E-10 | 51 | 75 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.58 | 51 | 73 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 53 | 73 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 3.6E-10 | 105 | 130 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.827 | 105 | 132 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 1.87E-7 | 105 | 127 | No hit | No description |
| SMART | SM00355 | 0.49 | 105 | 127 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 107 | 127 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 1.87E-7 | 221 | 248 | No hit | No description |
| Pfam | PF13912 | 2.7E-10 | 226 | 250 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.681 | 226 | 253 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.51 | 226 | 248 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 228 | 248 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 9.56E-6 | 281 | 308 | No hit | No description |
| Pfam | PF13912 | 4.7E-10 | 282 | 307 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 10.512 | 282 | 309 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.23 | 282 | 304 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 284 | 304 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MKHPRGQEEE VSLALALSTD SSTASDSSAP APARKRARRR SVVATSGEGE FVCKTCSRAF 60
PTFQALGGHR TSHLRGRNNG LDLGAVADKA IRLHRAADKE HRDKHECHIC GLGFEMGQAL 120
GGHMRRHREE MAAGGGGSSA DDWVWRCDAR PEEIAGRAAE PPVLLELFAY SFVFLLTMTK 180
HPRDGEVISL SLSLKLGAAA DGADGGDGRK KPRRGSSPAA SGSGEFVCKT CSRAFPSFQA 240
LGGHRTSHLR GRHGLALGLA ATTAKEHAAV TKKLQEKPPA SHECHICGQG FEMGQALGGH 300
MRRHREEAAA AAAAVHAPPV LLELFV
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC104433 | 0.0 | AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence. |
| GenBank | AK068861 | 0.0 | AK068861.1 Oryza sativa Japonica Group cDNA clone:J013170H07, full insert sequence. |
| GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | AY286474 | 0.0 | AY286474.1 Oryza sativa (japonica cultivar-group) zinc finger protein ZFP182 mRNA, complete cds. |
| GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
| GenBank | CT829316 | 0.0 | CT829316.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI011O15, full insert sequence. |
| GenBank | CT829317 | 0.0 | CT829317.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI016A02, full insert sequence. |
| GenBank | CT829318 | 0.0 | CT829318.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI021E01, full insert sequence. |
| GenBank | HQ858836 | 0.0 | HQ858836.1 Oryza sativa Japonica Group isolate UT1346 C2H2 transcription factor mRNA, partial cds. |
