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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OPUNC03G35740.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
NAC |
| Protein Properties |
Length: 309aa MW: 34717.3 Da PI: 7.1466 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC03G35740.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.5 | 2.3e-52 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
lppGfrFhPtd+elv +yL++k++g++l++ +i+evd+yk++PwdLp+++ + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v
OPUNC03G35740.1 17 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP 109
79****************************.88***************8777899*************************************99 PP
NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
+g++ g+kk Lvfy g+ap+g+ktdW+mheyrl
OPUNC03G35740.1 110 -RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 142
.999****************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MGMGMRRERD AEAELNLPPG FRFHPTDDEL VEHYLCRKAA GQRLPVPIIA EVDLYKFDPW 60
DLPERALFGA REWYFFTPRD RKYPNGSRPN RAAGNGYWKA TGADKPVAPR GRTLGIKKAL 120
VFYAGKAPRG VKTDWIMHEY RLADAGRAAA GAKKGSLRLD DWVLCRLYNK KNEWEKMQQG 180
KEVKEEASDM VTSQSHSHTH SWGETRTPES EIVDNDPFPE LDSFPAFQPP PPPTAMMVPK 240
KESMDDATAA ATIPRNNSNL FVDLSYDDIQ GMYSGLDMLP PGDDFYSSLF ASPRVKGATP 300
RAGMGMVPF
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KM576136 | 0.0 | KM576136.1 Oryza rufipogon stress-induced transcription factor NAC1 (SNAC1) mRNA, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Takasaki H, et al.
The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
Mol. Genet. Genomics, 2010. 284(3): p. 173-83
[PMID:20632034] - Chen Q,Wang Q,Xiong L,Lou Z
A structural view of the conserved domain of rice stress-responsive NAC1.
Protein Cell, 2011. 2(1): p. 55-63
[PMID:21337010]
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