PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G32250.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 351aa    MW: 37606.4 Da    PI: 7.8567
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G32250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.7e-32227282156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k r++W+peLH++Fv a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  OPUNC03G32250.1 227 KSRRCWSPELHRQFVAALQQLGGPQVATPKQIREVMKVDGLTNDEVKSHLQKYRLH 282
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.681224284IPR017930Myb domain
SuperFamilySSF466895.91E-17225285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28225285IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-26227282IPR006447Myb domain, plants
PfamPF002496.0E-7229280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGLDVGEIGM GLDLSLDLKM FAARSAVRMA AAAAKEVTGV EACIRSLEEE RRKIEMFRRE  60
LPLCARLLAD VIELMKEEAG KRRKDGDAAA AAAEAKAEDG DKTKWMSTAQ LWVDSRGSDA  120
DSENDRRSGS TSPASRLLGG AEESSSRAVA PPPYFRREER LVLRPAMPLL PPAAHRSPPP  180
GVAAAAAGDD HRHVVTTSFA PAVPSPVPAA LSLQTQAQQQ QQQQARKSRR CWSPELHRQF  240
VAALQQLGGP QVATPKQIRE VMKVDGLTND EVKSHLQKYR LHNRKSPGTA SASHSIVLVG  300
DLWASQEVSC SQSGSPQGPL QLSGSGVAVS AATAGDSCCE DDDKSEGYVR K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-13227280154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13227280154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13227280154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13227280154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056250.0AK105625.1 Oryza sativa Japonica Group cDNA clone:001-200-C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631206.10.0transcription factor HHO5
TrEMBLA0A0E0KJE30.0A0A0E0KJE3_ORYPU; Uncharacterized protein
STRINGOPUNC03G32250.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.14e-41G2-like family protein