PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G29570.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 586aa    MW: 62939.1 Da    PI: 5.7919
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G29570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.94.1e-1072175863374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + Ll+c +a ++ d  la   La ++  a+ +gdp +Rla+yf+ AL++rla+   ++ +  ++ ++++  s+e +  +k++++++P+ kf+hl
  OPUNC03G29570.1 217 QSLLSCSRAAAT-DPGLAAGELASVRAAATDAGDPAERLAFYFADALNRRLAS---GTGAPPTAVPDARFASDELTLCYKTLNDACPYSKFAHL 306
                      78999*998776.88999999*******************************9...55555555555556699********************* PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      taNqaIlea+  ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++RiTgv sp  g   + +l +t+ rL++fA+ lgv+fef + + + ++
  OPUNC03G29570.1 307 TANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPtRIRITGVPSPFLGpqPAASLAATNTRLRDFAKLLGVDFEFVP-LLRPVH 399
                      ****************************************88777*********988888999************************.599*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      +l+ +++ v+p+Ea+aVn++lql++ll +s +l     +vL+l kslsP vv++ e e+++n++ F++rf++al+yy ++f+sl++ + res e
  OPUNC03G29570.1 400 ELNKSDFLVEPDEAVAVNFMLQLYHLLGDSDELVR---RVLRLAKSLSPAVVTLGEYEVSLNRAGFVDRFANALSYYRSVFESLDVAMTRESPE 490
                      ***************************88888877...******************************************************** PP

             GRAS 282 rikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSa 372
                      r+ vEr ++g++i+ +v   ega+r+er+   ++W+  +e +GF+pv ls++a +qa+lll +++ +  y++ e   +++ l W++rpL++vSa
  OPUNC03G29570.1 491 RVRVERWMFGERIQRAVGpEEGADRTERMAGSSEWQTLMEWCGFEPVLLSNYARSQADLLLWNYDsKYKYSLVELPPAFLsLAWEKRPLLTVSA 584
                      *****************8356889*****************************************7778999999999988************* PP

             GRAS 373 Wr 374
                      Wr
  OPUNC03G29570.1 585 WR 586
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819958.11E-51677No hitNo description
SuperFamilySSF819958.11E-5118160No hitNo description
PROSITE profilePS5098556.993189564IPR005202Transcription factor GRAS
PfamPF035141.4E-104217586IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QQQQQQQQQQ RHHHHHHMPP PPSQQQMAPH HHQQKQHHQM  60
PPMPQAPPAS HGQIPGQLAY GGGGAAWPAG EHFFADAFGA SAGDAVFSDL AAAADFDSDG  120
WMESLIGDAP FQDSDLERLI FTTPPPPVPS PPPTHAAATA TATATAAAAA AAAAAAAAPR  180
PEAAPALLPQ PAAATPVACS SPSPSSADAS CSAPILQSLL SCSRAAATDP GLAAGELASV  240
RAAATDAGDP AERLAFYFAD ALNRRLASGT GAPPTAVPDA RFASDELTLC YKTLNDACPY  300
SKFAHLTANQ AILEATGAAT KIHIVDFGIV QGIQWAALLQ ALATRPEGKP TRIRITGVPS  360
PFLGPQPAAS LAATNTRLRD FAKLLGVDFE FVPLLRPVHE LNKSDFLVEP DEAVAVNFML  420
QLYHLLGDSD ELVRRVLRLA KSLSPAVVTL GEYEVSLNRA GFVDRFANAL SYYRSVFESL  480
DVAMTRESPE RVRVERWMFG ERIQRAVGPE EGADRTERMA GSSEWQTLME WCGFEPVLLS  540
NYARSQADLL LWNYDSKYKY SLVELPPAFL SLAWEKRPLL TVSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.02125861375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628849.10.0SCARECROW-LIKE protein 7
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLA0A0E0KIE10.0A0A0E0KIE1_ORYPU; Uncharacterized protein
STRINGOPUNC03G29570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-146GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]