 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC03G26200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
Trihelix |
| Protein Properties |
Length: 350aa MW: 37695.9 Da PI: 6.941 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC03G26200.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 58.1 | 2.3e-18 | 48 | 115 | 2 | 68 |
trihelix 2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68
Wt e+++Liea++++++ r ++ + ++W++v +++++rg++rs++qC+++w+nl ++ykk++++e
OPUNC03G26200.1 48 WTLPETMLLIEAKKRVHDGRRpAADQGLARWRWVEDYCWRRGCRRSQNQCNDRWDNLMRDYKKVRAQE 115
*************99998888357899*************************************9876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MDAGGSGTDA LLGQEEDEEA MNAMAAASTA NAMAVAVAVA REYRRGNWTL PETMLLIEAK 60
KRVHDGRRPA ADQGLARWRW VEDYCWRRGC RRSQNQCNDR WDNLMRDYKK VRAQELAAGG 120
GGGGLESYWV MGRAERKERG LPANLLREIY DAMGEVVERR MSSGGGGAVF LAGASSSGSG 180
GLADVPAMAM QASPLAQLLP RPLETTANCS SGSPERKRRR PSLDNQPPWG SITTSTPPAT 240
GRQGHQEHHH DDDEYAHHGA DGSSDDDDDG LGGAIGRCAA ILSVALENRE ASEERRHREV 300
IAAEERRGRA RQARREAGEQ CMAGLAAAVS QLAGSMLALA AKRRGPADPK
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC135792 | 0.0 | AC135792.3 Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence. |
| GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
