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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC03G25820.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
LBD |
Protein Properties |
Length: 204aa MW: 21302.2 Da PI: 9.0906 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC03G25820.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 140 | 7.7e-44 | 38 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
+CaaCk+lrr+Ca++Cv+apyfp +p+kfanvh++FGasnv+kll+++p ++r da+sslvyeA+ar+rdP+yG+vg i++lqqq+e l+a+l
OPUNC03G25820.1 38 PCAACKLLRRRCAAGCVFAPYFPPGEPHKFANVHRVFGASNVSKLLQDIPVQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQVEALQAQL 131
7********************************************************************************************* PP
DUF260 95 allkee 100
al+++e
OPUNC03G25820.1 132 ALAQAE 137
**9986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 204 aa
Download sequence Send
to blast |
MRDVVVAVGG GTKAASRQGQ GQGGVTLAAA ASGSAASPCA ACKLLRRRCA AGCVFAPYFP 60 PGEPHKFANV HRVFGASNVS KLLQDIPVQH RGDAVSSLVY EANARVRDPI YGCVGAISSL 120 QQQVEALQAQ LALAQAEMVR LRMSNDYITR RLRVRGGGGG GSTTTTTGSP SSMSSPAKTA 180 EPEPLCKPTP ELDMVVDQPD FGFW
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC139174 | 1e-147 | AC139174.3 Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence. |
GenBank | AP014959 | 1e-147 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
GenBank | CP012611 | 1e-147 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |