PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G24740.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 509aa    MW: 53612 Da    PI: 6.5089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G24740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.5e-17324370455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  OPUNC03G24740.1 324 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 370
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-21318382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.35E-18323374No hitNo description
Gene3DG3DSA:4.10.280.109.3E-21324378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-14324370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-18326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MNQFLPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HRKLPPRPPE KAVAAQGSAA  60
AAAAVQEDEA GLWFPFALAD SLDKDIFSDL FYEAPVAAAA AAVATGPGVH DDGEGKPCRD  120
DAAMADEKRG EPCAVSEAPR DLMPPPKSTH ASCSRQQTMS LADGGDNAGD LSELVRARTS  180
GVAARRKAEA GGASSSSMLS AIGSSICGSN QVQVQRTASE PGRGGALPSA VGSANAIPCG  240
GRGHGHGHEA TTVASSSGRS NCCFGTTTTT EPTSTSNRSS KRKRLDTTED SESPSEDAES  300
ESAALGRKPP AKMTTARRSR AAEVHNLSER RRRDRINEKM RALQELIPHC NKTDKASMLD  360
EAIEYLKSLQ LQLQMMWMGS GMAPPVMFPG VHQYLPRMGV GMGAAAAMPR MPFMAAPQPV  420
VPTPPVPLAH GSPAAVGLAE PYAHYLGVNH LQPPPTQGVG YYQLGAKAVQ QQKQQNPAPH  480
VPNGSMPPPP ENAPNTGPDF GPLNPFQDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328333ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4878300.0AJ487830.1 Oryza sativa mRNA for BP-5 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880142.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X3
TrEMBLA0A0E0KGN10.0A0A0E0KGN1_ORYPU; Uncharacterized protein
STRINGOPUNC03G24740.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-33phytochrome interacting factor 3