PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OPUNC03G23890.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 337aa MW: 35643.3 Da PI: 6.6409

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G23890.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	35	4.3e-11	3	75	3	67
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkk 67 G+ F+P d+el++++L++k++++++++ +i+++d+y++ P +L + + ++ +yfF++ +k OPUNC03G23890.1 3 GGLTFSPPDHELITKFLRPKIADDTIKV-PFIHDADVYSAPPPELAArhvpargtdRGAGAGAVYYFFCPGGQK 75 699***********************.88************84456665443222233466999987666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	16.104	1	134	IPR003441	NAC domain
SuperFamily	SSF101941	6.8E-21	3	134	IPR003441	NAC domain
Pfam	PF02365	4.6E-6	4	114	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MAGGLTFSPP DHELITKFLR PKIADDTIKV PFIHDADVYS APPPELAARH VPARGTDRGA 60 GAGAVYYFFC PGGQKAVLDA GGSRVGHLRR LSYGERDKGS GRRLTRLGWC MTEFGVDHVG 120 GAMASLVLCK MYRSPRAAQV VARQAASASS SCSKRKAADD LVHAPASSRH PHADVMPAGV 180 DGDEVSSIHP SGQFHVKEDE QSVVPAPEEQ ALVQTMDGPR SDHDVIMALA MGATVDDLLG 240 PKHGEPGEPS PCSVSGGGVE PCTGPASLGL GGDMAMAFPA PPAGEFSWDK ELAWIRELLS 300 GSPPRVPPCD QNQQLLYGCL NNYEPTRVTA VGSRKKY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC107206	1e-110	AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBank	AP014959	1e-110	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629679.1	4e-34	NAC transcription factor NAM-2
TrEMBL	A0A0E0KGC0	0.0	A0A0E0KGC0_ORYPU; Uncharacterized protein
STRING	OPUNC03G23890.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4363	21	58