PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OPUNC03G23240.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 733aa MW: 83954 Da PI: 6.5465

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G23240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	337.1	3.2e-103	353	725	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+avs ++++la+ +L+ ++++asp+gd qRla +++ L rl++++s++y+++ +++ + ++ l++++l ++P+l+ s OPUNC03G23240.1 353 LRTLLIHCAQAVSVSNHSLASDILKIIRHHASPTGDDSQRLALCLAYCLDVRLTGTGSQIYHKFITKRRN---IKDILKVFHLCLSTCPFLRAS 443 6789*******************************************************999988887...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + N++I++ +g +vHiiDf+i G+QWp+L+++La+ ++gpp+lRiTg++ pesg + +++g rLa++A+++++pfe++ + ++++ OPUNC03G23240.1 444 YYFSNRTIVDVSKGTPQVHIIDFGIYFGFQWPSLFEELAKIEDGPPKLRITGIELPESGfrPYARSKNIGLRLADYAKTFNIPFEYHHISSNKW 537 ******************************************************999999********************9999 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e+l++e+++++++E+l+Vn+++++++l de+vs++s+r++vL++++ ++Pkv+v + +++ + Fl+rf e +++y++lfd+l++++pr++e OPUNC03G23240.1 538 ESLSPEDFNIEKDEVLIVNCIHRMKSLGDETVSINSARSRVLSTIRMMKPKVFVQGVLNGSYGVPFFLTRFKEVMYHYTSLFDMLDKNIPRDNE 631 ******************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+ +Er + + nv+aceg+er+er e+++kW+ r +aG+ ++pl+ ++ + + ++rk + + + v+ee+++lvlgWk+r +++ S W+ OPUNC03G23240.1 632 TRMIIERDIYQYIMLNVIACEGTERIERPESYKKWKVRNLKAGLVQLPLNPAIVRETQDMVRKGYHKDFLVDEEDQWLVLGWKGRIIYASSTWQ 725 ****999999**********************************************9888***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.716	327	705	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-100	353	725	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MGSDDNKRFD DFHVITNGPR SDAYSNEESI NQVSKSNDSD LFLYPPSPMN YNAPLPIVSE 60 KDSYVAPSTS FCSKIYNPQL YVENGNGTAD WCQTSGGDYP EESSINSDIT LSYIDKMLMQ 120 EDIDDRGNED TALQAMEEPF YELVGQKYPA FPQQQPLCVC DHLQNLSANT DKSNGHSCNT 180 CSVTRMTNIS SSMNFNGNFQ GFQFPWSLCS ITREKEQFTH HSNRMVVGLK VDGLSISEKP 240 NQDNCSLQID AHYMRKHPLF EVHDRKSYPC IEDLDLLEGR SIKQYAIYYD EPIRDEMFDK 300 VLLCSDHKPL DEFVSFRAMT NNSSKSSQIG QGKTSARRKT TGKRIQKRDV VDLRTLLIHC 360 AQAVSVSNHS LASDILKIIR HHASPTGDDS QRLALCLAYC LDVRLTGTGS QIYHKFITKR 420 RNIKDILKVF HLCLSTCPFL RASYYFSNRT IVDVSKGTPQ VHIIDFGIYF GFQWPSLFEE 480 LAKIEDGPPK LRITGIELPE SGFRPYARSK NIGLRLADYA KTFNIPFEYH HISSNKWESL 540 SPEDFNIEKD EVLIVNCIHR MKSLGDETVS INSARSRVLS TIRMMKPKVF VQGVLNGSYG 600 VPFFLTRFKE VMYHYTSLFD MLDKNIPRDN ETRMIIERDI YQYIMLNVIA CEGTERIERP 660 ESYKKWKVRN LKAGLVQLPL NPAIVRETQD MVRKGYHKDF LVDEEDQWLV LGWKGRIIYA 720 SSTWQPNDSG DSD

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MGSDDNKRFD DFHVITNGPR SDAYSNEESI NQVSKSNDSD LFLYPPSPMN YNAPLPIVSE  60
KDSYVAPSTS FCSKIYNPQL YVENGNGTAD WCQTSGGDYP EESSINSDIT LSYIDKMLMQ  120
EDIDDRGNED TALQAMEEPF YELVGQKYPA FPQQQPLCVC DHLQNLSANT DKSNGHSCNT  180
CSVTRMTNIS SSMNFNGNFQ GFQFPWSLCS ITREKEQFTH HSNRMVVGLK VDGLSISEKP  240
NQDNCSLQID AHYMRKHPLF EVHDRKSYPC IEDLDLLEGR SIKQYAIYYD EPIRDEMFDK  300
VLLCSDHKPL DEFVSFRAMT NNSSKSSQIG QGKTSARRKT TGKRIQKRDV VDLRTLLIHC  360
AQAVSVSNHS LASDILKIIR HHASPTGDDS QRLALCLAYC LDVRLTGTGS QIYHKFITKR  420
RNIKDILKVF HLCLSTCPFL RASYYFSNRT IVDVSKGTPQ VHIIDFGIYF GFQWPSLFEE  480
LAKIEDGPPK LRITGIELPE SGFRPYARSK NIGLRLADYA KTFNIPFEYH HISSNKWESL  540
SPEDFNIEKD EVLIVNCIHR MKSLGDETVS INSARSRVLS TIRMMKPKVF VQGVLNGSYG  600
VPFFLTRFKE VMYHYTSLFD MLDKNIPRDN ETRMIIERDI YQYIMLNVIA CEGTERIERP  660
ESYKKWKVRN LKAGLVQLPL NPAIVRETQD MVRKGYHKDF LVDEEDQWLV LGWKGRIIYA  720
SSTWQPNDSG DSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-39	357	725	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024313379.1	0.0	scarecrow-like protein 9
TrEMBL	A0A0E0KG43	0.0	A0A0E0KG43_ORYPU; Uncharacterized protein
STRING	OPUNC03G23240.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-148	GRAS family protein