PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G18920.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 358aa MW: 39191.9 Da PI: 5.4339

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G18920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00022	307	346	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +rRR+ri + + Lr+++P +k + ++L +A+ Y+k+L OPUNC03G18920.1 307 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 346 9******************97...333..3458999999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.597	297	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-6	307	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00116	307	351	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-6	307	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MAQKKDDTTG ERAGVLMVWQ PVAQTRFRVF KHENGIAVRV IACFQPSQDC QAEYFRHLLK 60 PKILFAGCFL MGEKVNPWCH WSNPPWTESS ANNLHPPDVS LDNTNSLALP TYLNSDGYIY 120 SGVAASMPSI AASVADRPVS FSSRFVTTLA PSPLLSKGAL DTVPELQGSN ETNVTDVGAQ 180 NTECMHENTE EIDALLCSDS DEGCLKVHEL NNRVRKYPMQ NDTMSVESVA SAGASQPAKK 240 RRLSSGTDRS VVDTASSARP DHSVDQKHLS HDDDAQSCCI GEVESDHQFA LREGEEAEGD 300 DGPDDRKRRR ERIQETVAAL RKIVPGGIAK DATAVLDEAI CYLKYLKLKV KTLGAVSL

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MAQKKDDTTG ERAGVLMVWQ PVAQTRFRVF KHENGIAVRV IACFQPSQDC QAEYFRHLLK  60
PKILFAGCFL MGEKVNPWCH WSNPPWTESS ANNLHPPDVS LDNTNSLALP TYLNSDGYIY  120
SGVAASMPSI AASVADRPVS FSSRFVTTLA PSPLLSKGAL DTVPELQGSN ETNVTDVGAQ  180
NTECMHENTE EIDALLCSDS DEGCLKVHEL NNRVRKYPMQ NDTMSVESVA SAGASQPAKK  240
RRLSSGTDRS VVDTASSARP DHSVDQKHLS HDDDAQSCCI GEVESDHQFA LREGEEAEGD  300
DGPDDRKRRR ERIQETVAAL RKIVPGGIAK DATAVLDEAI CYLKYLKLKV KTLGAVSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	305	309	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC099323	0.0	AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence.
GenBank	AK065674	0.0	AK065674.1 Oryza sativa Japonica Group cDNA clone:J013036B10, full insert sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631787.1	0.0	transcription factor PIF4
TrEMBL	A0A0E0KEK7	0.0	A0A0E0KEK7_ORYPU; Uncharacterized protein
STRING	OPUNC03G18920.2	0.0	(Oryza punctata)