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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G18730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CAMTA | ||||||||
Protein Properties | Length: 1003aa MW: 112603 Da PI: 5.9767 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 178.2 | 1e-55 | 22 | 137 | 3 | 118 |
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 + kkrwl+++ei++iL n+++++l++e+++rp sgsl+L++rk +ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fqr OPUNC03G18730.1 22 EAKKRWLRPTEICEILSNYRSFSLSAEPPNRPGSGSLFLFDRKTLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQR 115 459******************************************************************************************* PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+ywlLee++++ivlvhylevk OPUNC03G18730.1 116 RTYWLLEEDFTHIVLVHYLEVK 137 *******************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.397 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 4.3E-76 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.0E-49 | 22 | 136 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 0.0015 | 449 | 537 | No hit | No description |
Gene3D | G3DSA:2.60.40.10 | 3.4E-7 | 449 | 536 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 5.95E-18 | 450 | 535 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.3E-7 | 450 | 535 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 2.33E-12 | 626 | 713 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.1E-11 | 640 | 715 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.77E-8 | 641 | 711 | No hit | No description |
PROSITE profile | PS50297 | 11.665 | 647 | 693 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF52540 | 1.33E-8 | 819 | 877 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.0082 | 826 | 848 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.791 | 827 | 856 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0054 | 828 | 847 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0051 | 849 | 871 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.267 | 850 | 874 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.0E-4 | 852 | 871 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1003 aa Download sequence Send to blast |
MAETRKFLMP NQPPDISQMV LEAKKRWLRP TEICEILSNY RSFSLSAEPP NRPGSGSLFL 60 FDRKTLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL 120 LEEDFTHIVL VHYLEVKGVK QSFSRAKEEI MQLSGADSPS CSNSITSQNQ MAPQIMDAAE 180 SPISGQISEY EGAEPAKFGA ADNCRASSRY NPLIEMQQPL DGIMMDNILY PSASAICNQV 240 SGYHGELPPG TSNLNGHTFT HSDIARMFDD SSSGLRDISR TLFDSMPYDE HFSGYANGFI 300 EPTLYSSFSM IEANNLEDSS LLETFTSEAL YTNNLSQKEA DALSFAGISS PEVNGNNYTE 360 GSTKHPLLKQ LSLDLFKIES SGLKKHDSFS RWMSKELGEV VDLDIKSSSD ALWSSIEIVN 420 AADGPSAPTN EQLDAYAVSP SLAQDQLFSI LDISPSFSYI GSKTKVLVTG TFLASEENVE 480 NCKWSCMFGD VEVPAEVLAD GALRCYAPEH QSGRVPFYVT CSNRIACSEV REFEYWDSDA 540 QYMETSHSQA NGINEMHLQI RLEKLLSLGP DDNQLLVCGN EKLELIDAIN SLMLDEKWSD 600 QGSPSGSKDV VTPRNQSLKK LMKEKLHCWL IYKINDCEKG PNILGKEGQG VIHLVAALGF 660 DWAIRPILVA GVNVNFRDAH GWTALHWAAS CGRTPADLAS TNGHKGIAGF LAESALTSHL 720 SALTLKDSKD SNVEEACGST SPEDLPEMNS SQLAVEDSHA ELLKDSLTAV RKSTQAAARI 780 FQAFRVESFH RKKVVEYGDD DCGLSDEHTF SLISLQKFKQ GQHDTRLHSA AVRIQNKFRG 840 WKGRKEFMII RQRIVKLQAH VRGHQVRKNY KKVVWSVGIV EKVILRWRRK GRGLRGFRPE 900 KQLEGQTQIQ PAKTEDEYDY LQDGRRQAEA RLQRALDRVR SMTQYPEARE QYRRLTTCVA 960 EMQQSRMMQD EMLSEAAGAD GSDFMNGLED LICRDDPKMS AIW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070350 | 0.0 | AK070350.1 Oryza sativa Japonica Group cDNA clone:J023052K16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631089.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X1 | ||||
TrEMBL | A0A0E0KEI2 | 0.0 | A0A0E0KEI2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G18730.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.2 | 0.0 | ethylene induced calmodulin binding protein |