 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OPUNC03G18230.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
MYB |
| Protein Properties |
Length: 290aa MW: 31055.2 Da PI: 8.5759 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC03G18230.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.3 | 7.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd lv +v+++G+g+W++++++ g+ R+ k+c++rw +yl
OPUNC03G18230.1 14 KGPWTPEEDIVLVSYVQEHGPGNWRAVPAKTGLLRCSKSCRLRWTNYL 61
79******************************99************97 PP
|
| 2 | Myb_DNA-binding | 43.6 | 6.8e-14 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg ++ E+ l++++ ++lG++ W++Ia++++ Rt++++k++w+++l
OPUNC03G18230.1 67 RGGFSDHEERLILHLQALLGNR-WAAIASYLP-DRTDNDIKNFWNTHL 112
7889******************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MGRPPCCDKE GVKKGPWTPE EDIVLVSYVQ EHGPGNWRAV PAKTGLLRCS KSCRLRWTNY 60
LRPGIRRGGF SDHEERLILH LQALLGNRWA AIASYLPDRT DNDIKNFWNT HLKKKLRPSS 120
ASFSPPPPTM STPLVARGQW ERKLQTDIDL ARRALRDALS VDAASNHPPD QPTPAIISSS 180
SSGPSAAPYA LSERNISMML SGWAPPGRGS AVAAGATESA STAGTSSEIT DCCSASSASN 240
CNNNPVLLPS TTTASMLACD SDAMATAAGV APLSAIESWL LLVALRNYAF
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC084762 | 0.0 | AC084762.8 Oryza sativa chromosome 3 BAC OSJNBa0013O08 genomic sequence, complete sequence. |
| GenBank | AF474136 | 0.0 | AF474136.1 Oryza sativa typical P-type R2R3 Myb protein gene, partial cds. |
| GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
