PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G17950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 370aa    MW: 39213 Da    PI: 6.3645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G17950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151464148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     rg W++eEde+l + ++++G g+W+++++      + R++k+c++rw +yl
  OPUNC03G17950.1 14 RGLWSPEEDEKLMNHIAKYGHGCWSSVPKLADslgLERCGKSCRLRWINYL 64
                     788**********************************************97 PP
2Myb_DNA-binding53.84.3e-1770114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +++eE++l+++++ +lG++ W+ Ia+ ++ gRt++++k++w++y
  OPUNC03G17950.1  70 RGTFSQEEEDLIIQLHSMLGNK-WSQIAAQLP-GRTDNEVKNFWNSY 114
                      899*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-26567IPR009057Homeodomain-like
PROSITE profilePS5129416.838964IPR017930Myb domain
SuperFamilySSF466892.02E-3012111IPR009057Homeodomain-like
SMARTSM007176.1E-121366IPR001005SANT/Myb domain
PfamPF002494.3E-141464IPR001005SANT/Myb domain
CDDcd001672.25E-111764No hitNo description
PROSITE profilePS5129427.23865119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2668119IPR009057Homeodomain-like
SMARTSM007172.0E-1669117IPR001005SANT/Myb domain
PfamPF002494.1E-1670114IPR001005SANT/Myb domain
CDDcd001671.14E-1172115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAKQSCCHKK KLRRGLWSPE EDEKLMNHIA KYGHGCWSSV PKLADSLGLE RCGKSCRLRW  60
INYLRPDLKR GTFSQEEEDL IIQLHSMLGN KWSQIAAQLP GRTDNEVKNF WNSYIKKKLR  120
DRGIDPATHK PLAADTTTTT NTTAVVVAAA ARSTATCRAV FSDAELVPTA AAVQQQEAPL  180
VGAMQLVDGI KMPLDDYWHA AAAVPGNGMP AAPSSTTTTL SAYHHALSLQ QATVGGCGGA  240
AFDMDGLSHC GVPQAVVVPS ASSSSTLTSI AGLSPAATDA EQSANVAATN LPWLDLGHAN  300
PVGTMDHYAG VLDELRWSDY FDGAYQAATA TQGGALQGQC LYDGGGGGGG GKDVDDAVQF  360
VDVHSLSNWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121195108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2321540.0AC232154.1 Oryza minuta clone OM__Ba0091N09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879543.11e-177transcription factor MYB4
TrEMBLA0A0E0KE780.0A0A0E0KE78_ORYPU; Uncharacterized protein
STRINGOPUNC03G17950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.12e-74myb domain protein 50