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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC03G17850.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
GeBP |
Protein Properties |
Length: 417aa MW: 44646.6 Da PI: 5.72 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC03G17850.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 111.5 | 5.5e-35 | 129 | 228 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91
lfqrlw+eeDeiv+L+++ +f+a++g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +++g+++sf+++h+q ife+
OPUNC03G17850.1 129 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVDRlRATGQSFSFRSPHEQAIFEI 222
79*************************9977778***************************************999****************** PP
DUF573 92 skkiWg 97
++ iW+
OPUNC03G17850.1 223 ARGIWR 228
*****7 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 417 aa
Download sequence Send
to blast |
MTRSYDFFSP LGRSREARNN PNPLPNPNPD SSRDRSPSIS DPIPNPMLPT VVDDPSAAAA 60 VGAAASSSFP DADVYGNGDS DDIDFPSDPN HATTQAFSSA AGGAAGPGGG GGGGGGAGSG 120 GGGGERRPLF QRLWTEEDEI VILRAFAEFT AQRGTAFASH QYDTDPFYED MRRRLQLDFS 180 KSQLVEKLRR LKRKYRNCVD RLRATGQSFS FRSPHEQAIF EIARGIWRPT SDKHGRDDSD 240 DDALPDAAAV AVPVPVPVPA PANGEVKSPS STRAQRRGRR RRTADAAATT ADASEPPQPY 300 PPAPVKAEDA LPHFFPQAQG AVTTAHVHGV DPASAAANAE GGILAPLFKE MVRAMLTAGM 360 APPALEPPAL GIPMEGEKWR QQRILELEVY LRRIDLLQDQ VRTALEELKS TPPATTQ
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC082644 | 0.0 | AC082644.10 Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence. |
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G04930.2 | 4e-33 | DNA-binding storekeeper protein-related transcriptional regulator |