PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G17650.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 354aa    MW: 39530.6 Da    PI: 8.4763
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G17650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35551472103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw +++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll+
  OPUNC03G17650.1  55 FLSKTYQLVDDPSTDHVVSWGKDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLS 139
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+ks+
  OPUNC03G17650.1 140 EIHRRKSS 147
                      *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5751144IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.54E-3352144IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-3752144IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-195578IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.0E-3155144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434094118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-19106118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MRDDVTGERG QIDIGEMAFL VERCGGEMVV SMERSHGSST TAAAAAVVTV APAPFLSKTY  60
QLVDDPSTDH VVSWGKDEAT FVVWRPPEFA RDLLPNYFKH NNFSSFVRQL NTYGFRKIVA  120
DRWEFANEFF RKGAKHLLSE IHRRKSSSCS QPPPPPPFPM HQHYPLSLFS PPTTRRSPPV  180
AAAAYHFQEE YCSSPAPDYA SGGGDLLAAL SEDNRQLRRR NSLLLSELAH MRKLYNDIIY  240
FLQNHVEPAA PPPLPAASCR LVELGPTTER HRSASPSGDD DAAVRLFGVR LVDHHGKKRR  300
VQLMEGDEQR SETVDKKALK RITTVARHVG TSLQPAYHRM GCNGEGGWSA QLIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A4e-22521445106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A4e-22521445106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2158260.0AC215826.3 Oryza punctata clone OP__Ba0078O01, complete sequence.
GenBankAC2299190.0AC229919.2 Oryza minuta clone OM__Ba0206A17, complete sequence.
GenBankAC2313320.0AC231332.1 Oryza minuta clone OM__Ba0219N21, complete sequence.
GenBankAC2330300.0AC233030.1 Oryza minuta clone OM__Ba0022H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627976.11e-151heat stress transcription factor B-4d
RefseqXP_025880033.11e-151heat stress transcription factor B-4d
RefseqXP_025880034.11e-151heat stress transcription factor B-4d
RefseqXP_025880035.11e-151heat stress transcription factor B-4d
RefseqXP_025880036.11e-151heat stress transcription factor B-4d
SwissprotQ10KX81e-152HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A0E0KE360.0A0A0E0KE36_ORYPU; Uncharacterized protein
STRINGOPUNC03G17650.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-71heat shock transcription factor B4