PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G15890.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 335aa    MW: 33714 Da    PI: 4.5425
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G15890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.95.3e-101311702359
                      EEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  23 sYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      sYYrCt++   gC+++++ + ++ dp+  +itY geH+++
  OPUNC03G15890.1 131 SYYRCTHKldqGCTATRQTQLCEADPSNYDITYYGEHTCR 170
                      9******9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.4E-8125171IPR003657WRKY domain
SuperFamilySSF1182901.96E-10130172IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-11130172IPR003657WRKY domain
PfamPF031063.8E-10130170IPR003657WRKY domain
PROSITE profilePS5081110.395131172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAFSSEGGVP AERVAAAVND LVEVREGLVR LRGFLPPLQA EQSSSSSPPP PCAELMDAMM  60
SKLMSAMAAL GGCGDIAGEV DAAGRWTSVA GSAHPMVVRQ AGESSAGRTR KRRGRSSTKR  120
VAATLDDGHV SYYRCTHKLD QGCTATRQTQ LCEADPSNYD ITYYGEHTCR NPSTIIPTAI  180
AYAGAAASDG PNNIISFGAT GGVASQLARE GTTTTASAAT QLSSSWGTSG GCGGDDVFSS  240
RREPFMQWEE LAAAVVHVRS AGVTSSTVGS ALAAENDGGN GDTAAGGGGG DGGGGGGDGG  300
GAGSFPSSPS TGSLGFVVGP LGSIEDVDDF FPFDP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2318790.0AC231879.1 Oryza minuta clone OM__Ba0177M23, complete sequence.
GenBankAC2318820.0AC231882.1 Oryza minuta clone OM__Ba0091G05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629721.11e-133probable WRKY transcription factor 53 isoform X1
TrEMBLA0A0E0KDE20.0A0A0E0KDE2_ORYPU; Uncharacterized protein
STRINGOPUNC03G15890.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-11WRKY DNA-binding protein 70