PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G11030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 27005.8 Da PI: 4.5851 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.6e-18 | 48 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr ++ +g+Wv+eIr p + +r++lg++ t+e Aa+a++aa ++l+g OPUNC03G11030.1 48 PYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 97 59****998.**********7.....335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 25 | No hit | No description |
SMART | SM00380 | 5.3E-35 | 48 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-29 | 48 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.918 | 48 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-19 | 49 | 106 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.7E-11 | 49 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.80E-19 | 49 | 105 | No hit | No description |
PRINTS | PR00367 | 6.3E-8 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-8 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MVKNTSNKCI AAAAGVGGGG GAVSCSGGGG DGKVQTMATA EAALAVRPYK GVRMRSWGSW 60 VSEIRAPHQK RRIWLGSYAT PEAAARAYDA ALLCLKGSDA VLNFPSSSSS SAAASSRLLD 120 SRRDNAEYSA AGDMSPRSIQ RVAAAAAAAF DAGAIAATSV VVDDSCSCSA EATSSTPTSA 180 TTSLSTLGSA GGGDVLDHAT TPSSSSSAAA NVCSPPLEGD HELWTELDAF ASPKFMDLMA 240 DGGTAFSSPW EEPEEDGEIM RLWSFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-12 | 49 | 109 | 15 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226782 | 0.0 | AC226782.1 Oryza minuta clone OM__Ba0164C18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630150.1 | 1e-111 | ethylene-responsive transcription factor ERF013 | ||||
TrEMBL | A0A0E0KBL1 | 0.0 | A0A0E0KBL1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G11030.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10830 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 3e-21 | ERF family protein |