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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OPUNC03G06940.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
HD-ZIP |
| Protein Properties |
Length: 241aa MW: 26307.5 Da PI: 7.5022 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC03G06940.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.8 | 8.9e-19 | 62 | 115 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq + Le F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
OPUNC03G06940.1 62 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 115
56689***********************************************99 PP
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| 2 | HD-ZIP_I/II | 113.7 | 1.2e-36 | 62 | 152 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e +L+e+l+
OPUNC03G06940.1 62 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLA 152
9**************************************************************************************9987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MSRREEEEKL LFPSFAFPEC FPEAATSGGE QKKARQRRRR KVKPEAAAAA LAGESGGDEQ 60
AKKRRLSDEQ ARFLEMSFKK ERKLETPRKV QLAAELGLDA KQVAVWFQNR RARHKSKLME 120
EEFAKLRSAH DAVVLQNCHL ETELLKLKER LADVEEEKAK LAAAAAATTG GGGGGGGGGS 180
SSPTSSSFST VTYHPALAGQ FGVEAAAEEA DLTYMSEYAY NNYMLELAAA GYCGGVYDQF 240
S
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 168 | 179 | TGGGGGGGGGGS |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK073446 | 0.0 | AK073446.1 Oryza sativa Japonica Group cDNA clone:J033043C24, full insert sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Gao S,Fang J,Xu F,Wang W,Chu C
Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
Plant Cell, 2016. 28(3): p. 680-95
[PMID:26977084]
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