 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC03G06250.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 314aa MW: 34009.2 Da PI: 4.4627 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC03G06250.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.2 | 1.4e-18 | 71 | 123 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ eq+++Le+ F +++++ ++++++A+ lgL+ rqV vWFqNrRa++k
OPUNC03G06250.1 71 KRRLALEQVRALERGFDADNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWK 123
4467789*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 126.6 | 1.1e-40 | 69 | 161 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+ eqv++LE+ F++++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktkqlE+d++aL++++dal+++ ++L++++++L++e++e
OPUNC03G06250.1 69 EKKRRLALEQVRALERGFDADNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRSRHDALRADCDALRRDKDALAAEIRE 161
69**************************************************************************************99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MKRPTSSRKS RKPEENLAFS EEGSLPAVTM EQQDEAELEE VDDDDEVDED KAGGHAAQSS 60
APPSCGLGEK KRRLALEQVR ALERGFDADN KLDPDRKARI ARDLGLQPRQ VAVWFQNRRA 120
RWKTKQLERD FAALRSRHDA LRADCDALRR DKDALAAEIR ELREKLSKPA DTAASVKVEA 180
GSVDAAVGAA AAVATVYKDG SSDDSDSSVV FNDEASPYSG AAFEQQQPGF IGFGSSFLID 240
ASAATVGCAS LPALESKWHG PYSYDSCKGG GYGFTEEWLA ASGEMDNDAA GFFSDEHASN 300
LNFGWCASGN EGWE
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 117 | 125 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK101522 | 0.0 | AK101522.1 Oryza sativa Japonica Group cDNA clone:J033046N04, full insert sequence. |
| GenBank | AK101601 | 0.0 | AK101601.1 Oryza sativa Japonica Group cDNA clone:J033051J21, full insert sequence. |
| GenBank | AK105644 | 0.0 | AK105644.1 Oryza sativa Japonica Group cDNA clone:001-200-F05, full insert sequence. |
| GenBank | CT831039 | 0.0 | CT831039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023E12, full insert sequence. |
