 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC03G06240.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 325aa MW: 35065.5 Da PI: 6.5202 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC03G06240.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 47.4 | 3.4e-15 | 106 | 157 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+k+L+
OPUNC03G06240.1 106 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVKELE 157
79****************************...*******************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MALEAVVFPQ GHFGYGCGRD SPAYGMPWCD VLAAAGGGFG EFYGVDEWDD QLQVASVDEW 60
DVASKDNSDA STEGKAAAER AAPVAAGRRK RRRTKVVKNK EEIECQRMTH IAVERNRRRQ 120
MNEYLAVLRS LMPPSYAQRG DQASIVGGAI NYVKELEQLL QSLEVQKSLK NRTGATDARD 180
SPFAGFFSFP QYSTSSRSGC SAAASSGSSG NASSVVMDDT AGSAESGRQP AAIADIEVTM 240
VEGHASLKVL ARRRPKQLLK LVVGLQQLRI PPLHLNVTTV DAMVLYSFSL KVEDDSKLGS 300
VEDIATAVHQ ILGSIQHQEA VLSIS
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 88 | 92 | RKRRR |
| 2 | 88 | 93 | RKRRRT |
| 3 | 106 | 117 | RMTHIAVERNRR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK107555 | 0.0 | AK107555.1 Oryza sativa Japonica Group cDNA clone:002-130-B03, full insert sequence. |
