PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G05000.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 309aa    MW: 33542.1 Da    PI: 6.7433
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G05000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-18120173356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  OPUNC03G05000.1 120 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 173
                      4568999**********************************************9 PP
2HD-ZIP_I/II129.91e-41119210192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da++++n++L +++++L++e+ 
  OPUNC03G05000.1 119 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVMADNDALLSHNKKLQAEIV 210
                      69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-1997176IPR009057Homeodomain-like
SuperFamilySSF466891.07E-19111177IPR009057Homeodomain-like
PROSITE profilePS5007117.41115175IPR001356Homeobox domain
SMARTSM003891.2E-17118179IPR001356Homeobox domain
CDDcd000867.75E-16120176No hitNo description
PfamPF000461.7E-15120173IPR001356Homeobox domain
PRINTSPR000311.0E-5146155IPR000047Helix-turn-helix motif
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5155171IPR000047Helix-turn-helix motif
PfamPF021834.4E-14175215IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MASNGMASSP SSFFPPNFLL HMAQQQAAPP HDPQEHHHHG HHGHHEQHHH LGPPPPHPHN  60
PFLPSSAQCP SSLQEFRGMA PMLGKRPMSY GDGGGDEVNG GGGGGGEDEL SDDGSQAGEK  120
KRRLNVEQVR TLEKNFELGN KLEPERKMQL ARALGLQPRQ VAIWFQNRRA RWKTKQLEKD  180
YDALKRQLDA VMADNDALLS HNKKLQAEIV ALKGREAASE LINLNKETEA SCSNRSENSS  240
EINLDISRPP PPAAAALDAA PTAHHHGGGG GGGGGNVQAS VDTASFGNLL CGVDEPPPFW  300
PWPDHQHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167175RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297870.0AC229787.1 Oryza minuta clone OM__Ba0057D03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629266.11e-155homeobox-leucine zipper protein HOX21
SwissprotQ8S7W91e-156HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A0E0K9C40.0A0A0E0K9C4_ORYPU; Uncharacterized protein
STRINGOPUNC03G05000.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-70HD-ZIP family protein