PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G03660.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1498aa    MW: 164362 Da    PI: 6.2249
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G03660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-0513881413123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                       ++C    C+++F +k +L+ H+r+ +
  OPUNC03G03660.1 1388 FQCDieFCDMTFETKAELRAHQRNiC 1413
                       899999*****************877 PP
2zf-C2H212.50.0004314131435323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       C+   Cgk+Fs++ +LkrH+ +H
  OPUNC03G03660.1 1413 CTdeSCGKRFSSHKYLKRHQCVH 1435
                       77778***************998 PP
3zf-C2H213.60.0001914711497123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       ykC+  dCg+sF+  s++ rH ++  H
  OPUNC03G03660.1 1471 YKCSapDCGQSFRYVSDYSRHRKKfnH 1497
                       99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.1E-132768IPR003349JmjN domain
PROSITE profilePS5118313.6052869IPR003349JmjN domain
PfamPF023754.4E-132962IPR003349JmjN domain
SuperFamilySSF511974.94E-27229401No hitNo description
SMARTSM005581.8E-47236405IPR003347JmjC domain
PROSITE profilePS5118434.56239405IPR003347JmjC domain
PfamPF023731.6E-36269388IPR003347JmjC domain
Gene3DG3DSA:3.30.160.609.4E-513791410IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551213881410IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.53813881410IPR007087Zinc finger, C2H2
SMARTSM003552.314111435IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.00614111440IPR007087Zinc finger, C2H2
SuperFamilySSF576671.35E-614131447No hitNo description
PROSITE patternPS00028014131435IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-714171441IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-1014351491No hitNo description
SMARTSM003556.6E-414411465IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.96714411470IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-1114421465IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014431465IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-1014661493IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1414711497IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.36514711498IPR007087Zinc finger, C2H2
PROSITE patternPS00028014731497IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1498 aa     Download sequence    Send to blast
MPPQPPPAAS ASAPDPAVPA WLRGLPRAPE YRPTESEFAD PIAFLSRVER EAAAYGICKV  60
IPPHPRPSRR FVFAHLNRSL VSSCDAPAPA PAPAPTASDS SIPPSSSSSS SSSSSPPASA  120
AVFTTRHQEL GNPRRGRPTP QVLKQVWQSG ERYTLDQFEA KSRAFSKTHL AGLHEPTALA  180
VESLFWKASA DRPIYIEYAN DVPGSGFAAP VQLQRKKKRK RETALTDEWE KSSGWRLSNS  240
PWNLQAIARA PGSLTRFMPD DVPGVTSPMV YIGMLFSWFA WHVEDHDLHS LNFLHTGAPK  300
TWYAVPGDRA VELEEVIRVY GYGGNTDRIA SLAVLGEKTT LMSPEVLIDN GVPCCRLVQY  360
PGEFVVTFPR AYHVGFSHGF NCGEAANFAT PQWLKFAKEA AVRRAVMNYL PMLSHQQLLY  420
LLAVSFISRN PRELLSGIRT SRLRDRKKEE RELLVKQEFL QDMISENELL CSFLEKKSVN  480
SVVLWEPDLL PSLTALHPCL SCSKAPEKKG EDGPRIESTQ SSSKDNNSSD GTECMTGTQS  540
KGLSMDSKQA PEGEKLDTDD GDDLPFDLSI DSGSLTCVAC GILGYPFMAI LQPSRKALEE  600
ISLVDKERYK LSCEKEICSN VLPCSPNDGS SGCSLIANRS SSPVENANFS HQNVKPNRSD  660
ISLMGKEFNG TLGKHSGISC SCSSENTVHP CGDTETPEKK IPSDCPGSEL SKQTGRGDVN  720
VPAVEGSDKT ISWNTGCTFA RPRIFCLQHA LEIEELLASK GGVHALIICH ADYVKLKALA  780
ISIAEEIEFQ FDYKDVALAN ASKSDLHLIN ISIDDEGYEE EGTDWTSRMG LNLKHCSKIR  840
KETSESQEQP PLSFWGLFSK PSPISVVPNL KWLCRKARTP YKVVGYASSP DVVATPDKLK  900
PAVTKTHIDT SGNSHENIKS EQTLQQGCVL QESNDVADMC RRPKENDQDG LSLINIPIAV  960
AEYPMMHQVC EGPVSVSACD DPICSFYPHD SPTTVAVSAG KPTREQCDVE STELSSSTTP  1020
VQHFLDNGLI AEGGSMNFVS NHEYLESDNA TSVCKDEQLQ VQQDQLATVL CNNPNTELVA  1080
GELHGGTASS TLENEDSCGN TSYCSGTVLK NSKPDTDGQP ETCDRSAVLV KLKSNCDQMI  1140
SSSDRSCSLT LDCPVSTDVA FSSEKLSMAH DLMSSELQAV HNSKAEAAAS LTDIKGAKLN  1200
SIHTAQLPHE SPRSDFINSE GAQSASATAI PRQNGTSMHT ESNSFDILLG VLADESKVSS  1260
GKDEVGKASL TLMTLASNDQ SADDLTQGEV AEITDPSHGF CASDIVSRSI GSSNRTNIIC  1320
YVRRKHKRKS GSEFNINSPQ SLGSFVRSPC ESLRPRTRPA IVEDMSNETR TVEASTAKKR  1380
KKEKAEAFQC DIEFCDMTFE TKAELRAHQR NICTDESCGK RFSSHKYLKR HQCVHRDERP  1440
FKCPWDGCPM TFKWLWAQTE HIRVHTGERP YKCSAPDCGQ SFRYVSDYSR HRKKFNHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-72214198346Transcription factor jumonji (Jmj) family protein
6ip4_A1e-72214198346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213220QRKKKRKR
2214220RKKKRKR
3214221RKKKRKRE
413221328RRKHKRK
513771381KKRKK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630480.10.0lysine-specific demethylase SE14-like isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0E0K8V50.0A0A0E0K8V5_ORYPU; Uncharacterized protein
STRINGOPUNC03G03660.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-176C2H2 family protein