PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G03600.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 147aa    MW: 15673.2 Da    PI: 5.3199
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G03600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-191768155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GVr ++ +g+++AeIrdp  +   +r++lg+f+taeeAa+ +++a+ +++g
  OPUNC03G03600.1 17 SSYRGVRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARVYDRAAFAMKG 68
                     67********.**********8333..4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-131768IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-221776IPR016177DNA-binding domain
SMARTSM003804.3E-351882IPR001471AP2/ERF domain
PROSITE profilePS5103223.8021876IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-311876IPR001471AP2/ERF domain
CDDcd000182.46E-291976No hitNo description
PRINTSPR003672.1E-111930IPR001471AP2/ERF domain
PRINTSPR003672.1E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEDDKNKEGN KPSSSSSSYR GVRKRPWGKF AAEIRDPERG GARVWLGTFD TAEEAARVYD  60
RAAFAMKGAT AVLNFPGDHA ASRMSTGSSS SSSTRPAPPA SSAASATAAS GTSRGGVTAM  120
DKVELECLDD KILEDLLAED NYRDKDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-281476163ATERF1
3gcc_A7e-281476163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2259020.0AC225902.1 Oryza minuta clone OM__Ba0181K15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630244.12e-57ethylene-responsive transcription factor ERF096
SwissprotQ9LTC53e-34ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0E0K8U91e-101A0A0E0K8U9_ORYPU; Uncharacterized protein
STRINGOPUNC03G03600.11e-102(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]