PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G01710.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 617aa    MW: 65506.2 Da    PI: 6.7231
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G01710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.6e-093473841954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  OPUNC03G01710.1 347 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 384
                      664459******************************88 PP
2BELL88.95.5e-29206275372
             BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       elq+ k kL  +leeVd+rY++y+eq+++v++ Feavag  +a+ Yt++A ++iSrhFr+L+d i+ q+
  OPUNC03G01710.1 206 LELQRLKDKLYIMLEEVDRRYRRYCEQMRAVAGGFEAVAGERAAAAYTAVAARTISRHFRSLRDGIVAQL 275
                      58999**************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-44138273IPR006563POX domain
PfamPF075264.3E-43144271IPR006563POX domain
PROSITE profilePS5007111.985325388IPR001356Homeobox domain
SMARTSM003896.6E-9328392IPR001356Homeobox domain
CDDcd000863.94E-12328389No hitNo description
SuperFamilySSF466892.4E-17329395IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-28331394IPR009057Homeodomain-like
PfamPF059208.2E-18345384IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MAHHPSLGFA DYFSAADASA SSITTLMPAM DEAAPELFGL QAGMELLGVR GLGMSMMPGA  60
TGKVTALVDA GGGDHDDDDG STMRFLSEQH QQPSQAPLSL SLCRPDGVLH LGGAARQHQL  120
APAAPWMMHH GASSASNVHG AWHLRSSRFL LPVQQLLQEF CSLPVDSTKR SNAKAAKQQE  180
DGRGDGSSSS SASWTPSPQI QAMEALELQR LKDKLYIMLE EVDRRYRRYC EQMRAVAGGF  240
EAVAGERAAA AYTAVAARTI SRHFRSLRDG IVAQLQAVRK ALGEKDVSVA GTTRGQTPRL  300
KVIDQCIRHH KSLGVGVGGA AMDGGHPWRP QRGLPERAVT ILRAWLFEHF LHPYPSDVDK  360
HILARQTGLS RSQVSNWFIN ARVRLWKPMV EEMYVEEMKD QDGGDNSGGQ GSLNPKPTCS  420
RASEARGGQQ LVVGDGTDGD AGEQKPTRAQ LRHDAGSLAS VVNVDVARAG GGGGVARLHQ  480
AENFGIMDHL DFDAYDDSHE QQQQHGGPGG VSLTLGLQQH GSHGGGGVNI AFGAPGSTHG  540
GAGFLYPGEQ MVDAVHPGHG HHHVVGGQFG VAMDGDASHA QESYRSLSAG FHLLRDLAGV  600
LADDLDVAAA AALATRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A2e-17334392159Homeobox protein Meis2
5bng_B2e-17334392159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1212070.0AK121207.1 Oryza sativa Japonica Group cDNA clone:J023088C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628192.10.0homeobox protein BEL1 homolog
TrEMBLA0A0E0K8480.0A0A0E0K848_ORYPU; Uncharacterized protein
STRINGOPUNC03G01710.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-73TALE family protein