 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC02G34820.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 180aa MW: 18643.1 Da PI: 4.7334 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC02G34820.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.3 | 0.00025 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y C+ C + F++ L H+++H
OPUNC02G34820.1 44 YNCTFCRRGFPTAQALGGHMNVH 66
89*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 180 aa
Download sequence Send
to blast |
MSQEITKDEL ISGGRSPSGD GDKAEEELRE AGSDDDEAGT RQPYNCTFCR RGFPTAQALG 60
GHMNVHRKDR VGRATPLSSS STAAAAVARR SVSYDTLVGL LRPPASGSEE AASTAAGGGS 120
LRSRTAEPAP QELRLFGRDD CAGRREEGGG RDGDGNGGHD HGEEELDLEL RLGGSGSAGS
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP004020 | 1e-129 | AP004020.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1119_A01. |
| GenBank | AP004878 | 1e-129 | AP004878.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0474F11. |
| GenBank | AP014958 | 1e-129 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 1e-129 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
