PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G31510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GeBP | ||||||||
Protein Properties | Length: 322aa MW: 35413.7 Da PI: 4.3705 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 49.2 | 1.5e-15 | 143 | 234 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 +f+r+ws eDe+ +L +l + ++g + +da++ ++ +s++ + + +++l K+ LK++++ kk +g+ sk hd+ ++lsk+ OPUNC02G31510.1 143 AFHRIWSTEDEVRILEALAAHRREHG--SLPQTDALIATLAGSLDNTgYGRKELQGKVSTLKRRYESTAKK--KGDL--PSKGHDRRLYDLSKS 230 699******************99999..678899**********8653899******************99..5554..5799*********** PP DUF573 95 iWgs 98 +Wgs OPUNC02G31510.1 231 VWGS 234 **95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-21 | 144 | 233 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MAPKRSTPPP PLPLPPPVAS SEETASGSDS EESEEEEESP VAQPAPVVSN KGEESESSGE 60 EESDEEEEEE EEEEEEEDLL RSSATKSRAP PQENRDEEDD SSDEEEGESS ESDKAAPPPL 120 PNPAPKQGAE GNGPKVSSPK RQAFHRIWST EDEVRILEAL AAHRREHGSL PQTDALIATL 180 AGSLDNTGYG RKELQGKVST LKRRYESTAK KKGDLPSKGH DRRLYDLSKS VWGSEAAATA 240 NGTEPREFSQ MCEMYPHLAE EVKVLEAAHP GLFKRDFGRL DDDKAHALDM KIKKQRIAEI 300 SVVLRRGDLT KEVTKVLTEL VE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627254.1 | 1e-132 | probable tyrosine-protein phosphatase DSP2 | ||||
TrEMBL | A0A0E0K5R4 | 0.0 | A0A0E0K5R4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G31510.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6729 | 27 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 2e-09 | DNA-binding storekeeper protein-related transcriptional regulator |