PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OPUNC02G31440.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 589aa MW: 61178.1 Da PI: 4.604

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G31440.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.4e-30	341	400	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ OPUNC02G31440.1 341 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 400 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-31	326	402	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-27	334	402	IPR003657	WRKY domain
PROSITE profile	PS50811	28.529	336	402	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	341	401	IPR003657	WRKY domain
Pfam	PF03106	1.1E-26	342	400	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence Send to blast
MSSKKRRAAI DLSLEAERRR PEEGGSGDRE ARDGAAAAEE DGDVKQGEGG PKEETGGEEE 60 KVVEVVVDQG EDGSNEEIKY RTQQGEMMEE DKQPAAAANI DDDDGGESDG AGASAEEKHM 120 VTEATGGEGD EGGDSRTAMA QDELSEMQEE MERMKEENRM LRRVVDKTVR DYYELQMKLA 180 AYQQQPADEP KETEVFLSLG ATAATAAVAG GGGGGGFPEA KSKEQAAWRR RSVGSDDDSD 240 DGKEDLGLSL SLGASSSYDD DQKAVEARPH DVDGAAAAMI SAGDGNKASR GYALLESSKV 300 HGAAPAAGEV AAAGGIASQS VNPANRKTRV SVRVRCQGPT MNDGCQWRKY GQKVAKGNPC 360 PRAYYRCTVA PGCPVRKQVQ RCLEDMSILV TTYEGTHNHP LPVGATAMAS TTSAAATFML 420 LSSTTSSSSV SDAAAGVSTA PSSSYLSPYL LNSASPHHPS SSPLLMPGPI AGGGAGMQHL 480 NLFGNSSSSL LATQAPGSNK YPWSPSHPPL AGAGGGLGVG KRPFWSTGGD GEKPAPAALP 540 ENVGAVMSDP NKFSAAIAAI NNFMGKDGES SSSKSSSKWG VVESLPPHE

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence Send to blast

MSSKKRRAAI DLSLEAERRR PEEGGSGDRE ARDGAAAAEE DGDVKQGEGG PKEETGGEEE  60
KVVEVVVDQG EDGSNEEIKY RTQQGEMMEE DKQPAAAANI DDDDGGESDG AGASAEEKHM  120
VTEATGGEGD EGGDSRTAMA QDELSEMQEE MERMKEENRM LRRVVDKTVR DYYELQMKLA  180
AYQQQPADEP KETEVFLSLG ATAATAAVAG GGGGGGFPEA KSKEQAAWRR RSVGSDDDSD  240
DGKEDLGLSL SLGASSSYDD DQKAVEARPH DVDGAAAAMI SAGDGNKASR GYALLESSKV  300
HGAAPAAGEV AAAGGIASQS VNPANRKTRV SVRVRCQGPT MNDGCQWRKY GQKVAKGNPC  360
PRAYYRCTVA PGCPVRKQVQ RCLEDMSILV TTYEGTHNHP LPVGATAMAS TTSAAATFML  420
LSSTTSSSSV SDAAAGVSTA PSSSYLSPYL LNSASPHHPS SSPLLMPGPI AGGGAGMQHL  480
NLFGNSSSSL LATQAPGSNK YPWSPSHPPL AGAGGGLGVG KRPFWSTGGD GEKPAPAALP  540
ENVGAVMSDP NKFSAAIAAI NNFMGKDGES SSSKSSSKWG VVESLPPHE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-22	328	404	1	76	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004058	1e-169	AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBank	AP004080	1e-169	AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
GenBank	AP014958	1e-169	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-169	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623937.2	0.0	probable WRKY transcription factor 47
TrEMBL	A0A0E0K5Q6	0.0	A0A0E0K5Q6_ORYPU; Uncharacterized protein
STRING	OPUNC02G31440.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8022	34	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	2e-49	WRKY DNA-binding protein 9