PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G31280.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 238aa    MW: 24979.7 Da    PI: 5.2326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G31280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-183180255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  OPUNC02G31280.1 31 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 80
                     69****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-303088IPR001471AP2/ERF domain
PfamPF008475.2E-113180IPR001471AP2/ERF domain
SMARTSM003804.0E-343194IPR001471AP2/ERF domain
CDDcd000188.77E-183190No hitNo description
SuperFamilySSF541712.68E-193189IPR016177DNA-binding domain
PROSITE profilePS5103221.5753188IPR001471AP2/ERF domain
PRINTSPR003675.7E-93243IPR001471AP2/ERF domain
PRINTSPR003675.7E-95470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVKSGQETAP GSGGNAAAAA RLGGGGGRGR QYKGVRMRSW GSWVSEIRAP NQKTRIWLGS  60
YSTAEAAARA YDAALLCLKG SAADLNFPVH LPFHIPAAAM SPKSIQRVAA AAAANATSPL  120
QPHHHNGAAS FASVTGGYNP AAAPTTPPCS YGDMSSCSAV SSPETANYYG ADHEMVARDD  180
DVDYAALADI EAFFQSPKCM DYSMMDPCST FFSPAPESLA TEWEDEGEIN LWSFSSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-142891266ATERF1
3gcc_A1e-142891266ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041250.0AP004125.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1767_D02.
GenBankAP0052870.0AP005287.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_A11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878708.11e-129ethylene-responsive transcription factor ERF014
TrEMBLA0A0E0K5N61e-175A0A0E0K5N6_ORYPU; Uncharacterized protein
STRINGOPUNC02G31280.11e-175(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.19e-28ERF family protein