 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC02G30720.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 229aa MW: 25722.7 Da PI: 5.0694 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC02G30720.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 86 | 2.2e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krie+ rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl ++s
OPUNC02G30720.1 9 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFAS 59
79*********************************************9986 PP
|
| 2 | K-box | 56.7 | 1.1e-19 | 90 | 171 | 18 | 99 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ ++a L++++ + +R++ Ge+Le Ls+ eLqqLe++Le +l ++ +K++ ++eqi+elq+k +l een++Lr+++
OPUNC02G30720.1 90 HSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVS 171
334555555555555889************************************************************9985 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 2.0E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 28.455 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 5.81E-39 | 2 | 75 | No hit | No description |
| PRINTS | PR00404 | 1.9E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.92E-30 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.9E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.9E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 14.082 | 86 | 176 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 1.4E-17 | 92 | 170 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009908 | Biological Process | flower development |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MARERREIKR IESAAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLSHFASS 60
SMDEIIDKYN THSNNLGKAE QPSLDLNLEH SKYAHLNEQL AEASLRLRQM RGEELEGLSI 120
DELQQLEKNL EAGLHRVMLT KDQQFMEQIS ELQRKSSQLA EENMQLRNQV SQISPAEKQV 180
VDTENFVTEE GQSSESVMTA LHSGSSQSQD NDDGSDVSLK LGLPCGAWK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CT834517 | 0.0 | CT834517.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA022M02, full insert sequence. |
