PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G24210.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 288aa    MW: 29638.5 Da    PI: 4.8263
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G24210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-1998148155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  OPUNC02G24210.1  98 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 148
                      57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.99E-3098156No hitNo description
PfamPF008471.7E-1398148IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2199156IPR016177DNA-binding domain
PROSITE profilePS5103224.11899156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3299157IPR001471AP2/ERF domain
SMARTSM003804.2E-3799162IPR001471AP2/ERF domain
PRINTSPR003676.7E-11100111IPR001471AP2/ERF domain
PRINTSPR003676.7E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEAAAIHAPT TSSDSGSCVT NGTREKHEIS KPKQLKRKRS TSPAAPPLGC GGQGQEAAVE  60
TDAGAARGGG AGEEESSSCG GGGERAGVRK RDDAGRHPSY RGVRRRSWGK WVSEIREPRK  120
KSRIWLGTFP TAEMAARAHD VAALAIKGRA AHLNFPSLAH TLPRPASTSP SDIQAAAALA  180
AAAATDQCES SSSSSAVAAA AATDAEATES TSSAAASPCA VTSSVEENAL FDLPDLLLDL  240
SDGLWCSPVW TAPADQYDDG DDGDDAAAPL LWAEQCWMDA TAPSVQPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1892156272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376540.0CT837654.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054J01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626317.11e-102ethylene-responsive transcription factor TINY
SwissprotQ8LBQ74e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0E0K3560.0A0A0E0K356_ORYPU; Uncharacterized protein
STRINGOPUNC02G24210.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]