PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G23730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 616aa MW: 66721.9 Da PI: 4.6499 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.3 | 2.4e-29 | 83 | 167 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi++r+em+ ++r++ lk+p Wee s++++e g++rs k+Ckek+en+ k+yk++keg+ +r++++s +++f+qlea OPUNC02G23730.1 83 RWPREETLALIRIRSEMDAAFRNATLKAPVWEELSRRLAELGYQRSGKKCKEKFENVDKYYKRTKEGRTGRQDGKS--YRFFSQLEA 167 8*********************************************************************866665..*******85 PP | |||||||
2 | trihelix | 108.5 | 4.4e-34 | 380 | 465 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++r e+ee++++ k+plWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a OPUNC02G23730.1 380 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYHRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 465 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.12 | 76 | 140 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.19 | 80 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 4.66E-27 | 82 | 147 | No hit | No description |
Pfam | PF13837 | 5.6E-21 | 82 | 168 | No hit | No description |
SMART | SM00717 | 1.5E-5 | 377 | 439 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 379 | 436 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.689 | 379 | 437 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.25E-25 | 379 | 444 | No hit | No description |
Pfam | PF13837 | 1.7E-22 | 380 | 466 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MQHPQGAGEP TMDAFSLPPV TTQAPASSDV LLPTQPQPAA PEEFQAAAAA AAATAVNSND 60 DDMMMVDDAV AGSVGGSGSS GNRWPREETL ALIRIRSEMD AAFRNATLKA PVWEELSRRL 120 AELGYQRSGK KCKEKFENVD KYYKRTKEGR TGRQDGKSYR FFSQLEALHA AAPPPHQQKG 180 GMPVDDPQPL AMARMMLPAA ADLGFLSMSS DSESDDESDE EEEEAAPDGG REVLGDDEEE 240 DGEGSSSSSS RKLMAMFEGM MRQVTEKQDA MQRVFLETLE KWEAERTERE EAWRRKEVAR 300 INREREQLSK ERAAAASRDA ALIAFLQRVG GAGEPVKLSP HHDAAAAGLQ LVPVPAPRAK 360 AEDVWAAAGG DGSGTTAPSR WPKEEVQALI DLRMEKEEQY NDMGPKGPLW EEIAAGMQRI 420 GYHRSAKRCK EKWENINKYF KKVKESNKRR PEDSKTCPYF HQLDAIYRKK HFAGRASAAS 480 GVTIAASHSS LAIVTVSEQD NPSQRELEGK SSNDIGIVQL AVPLLVHNAP DKKVEGSEGI 540 VAETDITAAE ETDSDEMGGN YTDDGDDDDK MQYKIEFQKP TAGGGGGGGD DAPAAATTAA 600 ATSSAPASNT SFLAVQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111742 | 0.0 | AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878530.1 | 0.0 | trihelix transcription factor GTL1 isoform X1 | ||||
TrEMBL | A0A0E0K301 | 0.0 | A0A0E0K301_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G23730.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 4e-49 | Trihelix family protein |